Rmu_sc0003024.1_g000026

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003024.1
Physical Location & Seq
Forward (+)
87024 .. 87329
306 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003024.1_g000026.1.cds

Sequence Viewer

Length: 306 bp
atgtttatgaggcgacatattgatcctaacttacgctgggaataccttcagttgaagacacctaaagaactgtgggatgcccttaagggatgttttgggaacattcatgacaccttgctcccaaaactaaccgttcagtggaatgaaatccgcttgcttgactacaaaaaggtcaatgacttcaacaaggacatgttgcgcctaaaggcaggtctaaatttctgtggaaaggaactcacagaagatgatatgatccagaagactctttccacttttcctacttcagcaattagtaataaggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.92

Weight (kDa)

8.95

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025513)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 17, 247
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 32, 267
AfiI CCNNNNNNNGG 1 cut(s) 138
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 2 cut(s) 55, 184
AlwI GGATC 2 cut(s) 17, 247
AoxI GGCC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 62, 266
BfaI CTAG 1 cut(s) 304
BfrI CTTAAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 200
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 62, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 82, 95
BseLI CCNNNNNNNGG 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 22, 252
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 302
BspHI TCATGA 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 17, 247
BspTI CTTAAG 1 cut(s) 83
BssMI GATC 2 cut(s) 22, 252
Bst4CI ACNGT 2 cut(s) 72, 133
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 155
BstF5I GGATG 2 cut(s) 82, 95
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 25, 255
BstMBI GATC 2 cut(s) 22, 252
BstNSI RCATGY 1 cut(s) 196
BstV2I GAAGAC 2 cut(s) 62, 266
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 82, 95
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
CviAII CATG 2 cut(s) 107, 193
CviJI RGCY 1 cut(s) 302
CviKI_1 RGCY 1 cut(s) 302
DpnI GATC 2 cut(s) 24, 254
DpnII GATC 2 cut(s) 22, 252
Eco147I AGGCCT 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 32, 267
FaeI CATG 2 cut(s) 110, 196
FaiI YATR 5 cut(s) 8, 18, 108, 194, 251
FatI CATG 2 cut(s) 106, 192
FokI GGATG 2 cut(s) 89, 102
FspBI CTAG 1 cut(s) 304
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 302
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 110, 196
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 107, 256
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 72, 133
Hsp92II CATG 2 cut(s) 110, 196
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 22, 252
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 22, 195, 269
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 304
MalI GATC 2 cut(s) 24, 254
MboI GATC 2 cut(s) 22, 252
MboII GAAGA 3 cut(s) 67, 254, 271
MluCI AATT 2 cut(s) 217, 288
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 1 cut(s) 3
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 83
NdeII GATC 2 cut(s) 22, 252
NlaIII CATG 2 cut(s) 110, 196
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 106
PceI AGGCCT 1 cut(s) 302
PciI ACATGT 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 45
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 22, 252
SchI GAGTC 1 cut(s) 256
SetI ASST 5 cut(s) 48, 64, 116, 174, 214
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 9 cut(s) 49, 119, 127, 166, 170, 199, 205, 222, 268
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 217, 288
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 304
StuI AGGCCT 1 cut(s) 302
TaaI ACNGT 2 cut(s) 72, 133
TasI AATT 2 cut(s) 217, 288
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 95, 159
TspRI CASTG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.