Rmu_sc0002993.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002993.1
OG0025513
Physical Location & Seq
Forward (+)
1757 .. 2014
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002993.1_g000002.1.cds

Sequence Viewer

Length: 258 bp
atgtttctgaggcgacatattgatcctagcctacgctgggagtaccttcagttgaagacacccaaagaactgtgggatgcccttaagggatgttttgggaacattcatgacattgaactggccgttctatggaatggaatccgtttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcggcagttgcgccttaaggcacatctcaatttctgtggaagggaaatcacagaagatgatatgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

85

Amino Acids

10.3

Weight (kDa)

7.82

Isoelectric Point (pI)

69.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025513)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001551.1_g000001 Rmu_sc0002993.1_g000002 Rmu_sc0003024.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 37, 129
AflII CTTAAG 2 cut(s) 83, 203
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 3 cut(s) 55, 116, 175
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 107
BfaI CTAG 2 cut(s) 27, 256
BfrI CTTAAG 2 cut(s) 83, 203
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 129
Bse1I ACTGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 82, 95
BseLI CCNNNNNNNGG 2 cut(s) 37, 129
BseNI ACTGG 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 37, 129
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 22, 252
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 122
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 1 cut(s) 17
BspTI CTTAAG 2 cut(s) 83, 203
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 22, 252
Bst4CI ACNGT 1 cut(s) 72
BstAFI CTTAAG 2 cut(s) 83, 203
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 82, 95
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 25, 255
BstMBI GATC 2 cut(s) 22, 252
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 82, 95
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 107, 184
CviJI RGCY 2 cut(s) 30, 122
CviKI_1 RGCY 2 cut(s) 30, 122
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 24, 254
DpnII GATC 2 cut(s) 22, 252
EaeI YGGCCR 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 32
FaeI CATG 2 cut(s) 110, 187
FaiI YATR 5 cut(s) 18, 108, 130, 185, 251
FatI CATG 2 cut(s) 106, 183
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 2 cut(s) 89, 102
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 27, 256
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 122
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 110, 187
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 56, 222
HpyCH4III ACNGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 110, 187
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 22, 252
LpnPI CCDG 2 cut(s) 22, 104
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 27, 256
MalI GATC 2 cut(s) 24, 254
MboI GATC 2 cut(s) 22, 252
MboII GAAGA 2 cut(s) 67, 254
MluCI AATT 1 cut(s) 217
MnlI CCTC 1 cut(s) 3
MseI TTAA 2 cut(s) 84, 204
MspCI CTTAAG 2 cut(s) 83, 203
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 22, 252
NlaIII CATG 2 cut(s) 110, 187
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 192
PscI ACATGT 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 84, 204
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 22, 252
SetI ASST 1 cut(s) 48
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 7 cut(s) 39, 49, 119, 131, 161, 190, 196
SmlI CTYRAG 2 cut(s) 83, 203
SmoI CTYRAG 2 cut(s) 83, 203
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 190
SspMI CTAG 2 cut(s) 27, 256
TaaI ACNGT 1 cut(s) 72
TasI AATT 1 cut(s) 217
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 84, 204
Tru9I TTAA 2 cut(s) 84, 204
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 131
Vha464I CTTAAG 2 cut(s) 83, 203
XceI RCATGY 1 cut(s) 187
XspI CTAG 2 cut(s) 27, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.