Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001598.1

Orthogroup ID

OG0022802

Physical Location & Seq

Genomic Coordinates Forward (+)

2981 .. 3717

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001598.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggccggtgttattgttaacagcttctatgaactcgaatcaaattatgcagatcattacaggaatatttttggaagggaagcgtggcatattgacccagtttccttgttcaacaaggcagcagttgatgaagaaaatgactgcttcaattggctaaattttaagaaacccagttcagtcatttacatatgttttggcagcatgaccaatttcagtgattctcagcttctggaaattgcagtagggcttgaggctagtgggcaggagttcatttgggttgtgaagaaagaaaagaaagaaaaagaagagtgcagtgtctgctggggtgccaatgatcacttggctggtgtctgcggagcagtttacaatgagaagttggtgactcagatacttgggattggggttgttgttggtgctcaaaagtggtcgacatttgaggaggatagtgtgaagagagaagccagtgtgaaaagtaaagccatagaaaaggctttgactagaatcatggtggatggtgaagctgaaaaaatcagaagcaaagccaaagcgcatggtgagatggcaacaagggctgttcaagaaggtggctcatctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

199

Amino Acids

22.11

Weight (kDa)

5.34

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022802)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0256191 RchiOBHm_Chr6g0256291
rosa_multiflora	Rmu_sc0001598.1_g000002
rosa_roxburghii	Rroxscaffold_7G00209370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	428
AciI	CCGC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	112, 148, 578
AluBI	AGCT	3 cut(s)	24, 226, 521
AluI	AGCT	3 cut(s)	24, 226, 521
Alw21I	GWGCWC	1 cut(s)	418
AlwNI	CAGNNNCTG	2 cut(s)	229, 318
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	119, 198
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	391, 527, 566
BanI	GGYRCC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	131, 210
BccI	CCATC	2 cut(s)	506, 553
BclI	TGATCA	1 cut(s)	334
BfaI	CTAG	3 cut(s)	255, 498, 598
BisI	GCNGC	2 cut(s)	120, 199
BlsI	GCNGC	2 cut(s)	121, 200
BmiI	GGNNCC	1 cut(s)	328
BmrI	ACTGGG	2 cut(s)	92, 165
BmuI	ACTGGG	2 cut(s)	92, 165
BpuEI	CTTGAG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	98, 171, 462
BseGI	GGATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	236, 398
BseNI	ACTGG	3 cut(s)	98, 171, 462
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	131, 210
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	6
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	52, 334
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	235, 397
BspLI	GGNNCC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	98, 171, 462
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	2 cut(s)	52, 334
Bst6I	CTCTTC	2 cut(s)	300, 446
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	222, 384
BstF5I	GGATG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	2 cut(s)	55, 337
BstMBI	GATC	2 cut(s)	52, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 569
BstV1I	GCAGC	2 cut(s)	131, 210
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	220, 319, 469
CaiI	CAGNNNCTG	2 cut(s)	229, 318
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	5
CviAII	CATG	3 cut(s)	202, 505, 551
DdeI	CTNAG	2 cut(s)	222, 384
DpnI	GATC	2 cut(s)	54, 336
DpnII	GATC	2 cut(s)	52, 334
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	300, 446
EarI	CTCTTC	2 cut(s)	300, 446
FaeI	CATG	3 cut(s)	205, 508, 554
FaiI	YATR	9 cut(s)	30, 48, 90, 188, 190, 203, 482, 506, 552
FatI	CATG	3 cut(s)	201, 504, 550
FauNDI	CATATG	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	120, 199
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	120, 199
FspBI	CTAG	3 cut(s)	255, 498, 598
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	120, 199
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	205, 508, 554
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	2 cut(s)	19, 429
HindII	GTYRAC	2 cut(s)	19, 429
HinfI	GANTC	4 cut(s)	38, 218, 382, 501
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	391, 527, 566
Hpy166II	GTNNAC	3 cut(s)	19, 364, 429
Hpy188I	TCNGA	2 cut(s)	387, 533
Hpy188III	TCNNGA	2 cut(s)	230, 578
Hpy8I	GTNNAC	3 cut(s)	19, 364, 429
HpyAV	CCTTC	2 cut(s)	69, 575
HpyCH4V	TGCA	3 cut(s)	50, 239, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 569
HpyF3I	CTNAG	2 cut(s)	222, 384
Hsp92II	CATG	3 cut(s)	205, 508, 554
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	52, 334
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	9 cut(s)	19, 46, 111, 184, 215, 248, 307, 330, 475
Lsp1109I	GCAGC	2 cut(s)	131, 210
MaeI	CTAG	3 cut(s)	255, 498, 598
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	54, 336
MboI	GATC	2 cut(s)	52, 334
MboII	GAAGA	4 cut(s)	143, 295, 317, 463
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	5 cut(s)	43, 148, 157, 208, 234
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	3 cut(s)	244, 430, 433
MseI	TTAA	2 cut(s)	18, 162
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	318, 569
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	2 cut(s)	52, 334
NlaIII	CATG	3 cut(s)	205, 508, 554
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	38, 218, 501
PkrI	GCNGC	2 cut(s)	121, 200
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	328
PstNI	CAGNNNCTG	2 cut(s)	229, 318
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	18, 162
SatI	GCNGC	2 cut(s)	120, 199
Sau3AI	GATC	2 cut(s)	52, 334
SchI	GAGTC	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	4 cut(s)	26, 228, 523, 586
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	43, 148, 157, 208, 234
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	255, 498, 598
TaqI	TCGA	2 cut(s)	36, 428
TasI	AATT	5 cut(s)	43, 148, 157, 208, 234
TfiI	GAWTC	3 cut(s)	38, 218, 501
Tru1I	TTAA	2 cut(s)	18, 162
Tru9I	TTAA	2 cut(s)	18, 162
TscAI	CASTG	3 cut(s)	220, 319, 469
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	119, 198
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	45, 144, 259
TspRI	CASTG	3 cut(s)	220, 319, 469
XapI	RAATTY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	3 cut(s)	255, 498, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.