Rroxscaffold_7G00209370

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0022802
Physical Location & Seq
Forward (+)
59622319 .. 59623211
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209370.1

Sequence Viewer

Length: 675 bp
ATGCACCACAATTTTACAAAGCGACCCAAAGAAGGAAAATATTGGGGTTTGATTATGAAATCGAACTTCTACTCCCGAAGTTCCCCACCGTCGAGGCCCGGGTTGCCACAAGAATGTGAGAGTTTTAGCTTGGCTACGACACAAGAGATGGAGCTAAAATTCTTCAAGGCCGTCACTTTGCTTCAACCACAACTTGAGCAGATTTTGGACCAACACCGTCCTCATTGTCTCGTTGCCGATGCCTTGTTTCCTTGGGCTACAAATGTTGCTGCAAAATTTGGAATTCCAAGCCTTCTCTTTCATGGAACCGGTTTTTTCTCATTGTGTGCTTCAATGAATTATGCAGATCACTATAGGAAGATGTTTGGGAGGAAGACATGGCATATAGGCCCGGTGTCACCGTACAACAAGGCAGCTGAAGATAAAGTAGAGAGGGGATGCGTGGAAAGTTCTATTGAGGAAGTGCACCGGTGCATATATTGGCTTAATTCTAAGAAACCCAAGACAGTTGTTTATGCATGTTTTGGAAGCTCGACCAATTTCGGTGATTCTCACTCGGAAATTGCAGTGGGGCTAGAGGCTAGCGGGCAAGAGTTCATTTGGGTTGTGAAGAAAGAAGAGAAAGATAAAGAAGAGTGGTTGCTCGAAGGGTTTGAGCGAGAGAATGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

224

Amino Acids

25.67

Weight (kDa)

7.66

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022802)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0256191 RchiOBHm_Chr6g0256291
rosa_multiflora Rmu_sc0001598.1_g000002
rosa_roxburghii Rroxscaffold_7G00209370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 585
AcsI RAATTY 3 cut(s) 158, 275, 282
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 32
AgeI ACCGGT 2 cut(s) 308, 468
AgsI TTSAA 3 cut(s) 166, 185, 333
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 4 cut(s) 129, 154, 416, 531
AluI AGCT 4 cut(s) 129, 154, 416, 531
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 233
Alw44I GTGCAC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 3 cut(s) 95, 168, 388
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 269, 413
ApoI RAATTY 3 cut(s) 158, 275, 282
AsiGI ACCGGT 2 cut(s) 308, 468
AspS9I GGNCC 3 cut(s) 96, 208, 389
AsuC2I CCSGG 3 cut(s) 99, 100, 392
AsuHPI GGTGA 2 cut(s) 390, 557
AsuNHI GCTAGC 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 256, 425
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 155
BcnI CCSGG 3 cut(s) 99, 100, 392
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 575, 582
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 270, 414
BlsI GCNGC 2 cut(s) 271, 415
Bme1390I CCNGG 3 cut(s) 99, 100, 392
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 96, 208, 389
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 3 cut(s) 99, 100, 392
BmsI GCATC 2 cut(s) 229, 428
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 3 cut(s) 99, 100, 392
BsaJI CCNNGG 2 cut(s) 98, 251
BsaWI WCCGGW 2 cut(s) 308, 468
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 2 cut(s) 308, 468
BseDI CCNNGG 2 cut(s) 98, 251
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 256, 425
BshFI GGCC 3 cut(s) 97, 170, 390
BshTI ACCGGT 2 cut(s) 308, 468
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 4 cut(s) 99, 309, 392, 469
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 3 cut(s) 97, 170, 390
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 585
BspANI GGCC 3 cut(s) 97, 170, 390
BspLI GGNNCC 1 cut(s) 307
BspOI GCTAGC 1 cut(s) 585
BsrFI RCCGGY 2 cut(s) 308, 468
BssAI RCCGGY 2 cut(s) 308, 468
BssECI CCNNGG 2 cut(s) 98, 251
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 90, 218, 402, 508
Bst6I CTCTTC 2 cut(s) 612, 627
BstC8I GCNNGC 2 cut(s) 583, 587
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 522
BstSCI CCNGG 3 cut(s) 97, 98, 390
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 256, 425
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 3 cut(s) 97, 170, 390
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 583, 587
Cfr10I RCCGGY 2 cut(s) 308, 468
Cfr13I GGNCC 3 cut(s) 96, 208, 389
Cfr9I CCCGGG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 403
CspAI ACCGGT 2 cut(s) 308, 468
CviAII CATG 3 cut(s) 302, 378, 519
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 492
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 612, 627
EarI CTCTTC 2 cut(s) 612, 627
Eco130I CCWWGG 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 3 cut(s) 305, 381, 522
FatI CATG 3 cut(s) 301, 377, 518
FauI CCCGC 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 270, 414
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 270, 414
FspBI CTAG 2 cut(s) 575, 582
GluI GCNGC 2 cut(s) 270, 414
HaeIII GGCC 3 cut(s) 97, 170, 390
HapII CCGG 4 cut(s) 99, 309, 392, 469
Hin1II CATG 3 cut(s) 305, 381, 522
HinfI GANTC 1 cut(s) 548
HpaII CCGG 4 cut(s) 99, 309, 392, 469
HphI GGTGA 2 cut(s) 390, 557
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 4 cut(s) 26, 302, 641, 663
HpyCH4III ACNGT 4 cut(s) 90, 218, 402, 508
HpyCH4V TGCA 7 cut(s) 4, 272, 344, 466, 474, 518, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 3 cut(s) 305, 381, 522
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 112, 322, 405, 482
Lsp1109I GCAGC 2 cut(s) 256, 425
LweI GCATC 2 cut(s) 229, 428
MaeI CTAG 2 cut(s) 575, 582
MaeIII GTNAC 2 cut(s) 172, 396
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 7 cut(s) 154, 370, 385, 431, 622, 629, 644
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 8 cut(s) 10, 158, 275, 282, 337, 487, 538, 561
MnlI CCTC 6 cut(s) 87, 231, 363, 426, 451, 571
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 4 cut(s) 99, 309, 392, 469
MspR9I CCNGG 3 cut(s) 99, 100, 392
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 3 cut(s) 99, 100, 392
NdeII GATC 1 cut(s) 346
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 3 cut(s) 305, 381, 522
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 172, 396
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 522
PfeI GAWTC 1 cut(s) 548
PinAI ACCGGT 2 cut(s) 308, 468
PkrI GCNGC 2 cut(s) 271, 415
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 3 cut(s) 96, 208, 389
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 2 cut(s) 270, 414
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 3 cut(s) 96, 208, 389
ScrFI CCNGG 3 cut(s) 99, 100, 392
SduI GDGCHC 1 cut(s) 468
SetI ASST 5 cut(s) 131, 156, 418, 533, 674
SfaNI GCATC 2 cut(s) 229, 428
SfcI CTRYAG 1 cut(s) 352
SgrAI CRCCGGYG 1 cut(s) 468
SinI GGWCC 1 cut(s) 208
SmaI CCCGGG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 8 cut(s) 10, 158, 275, 282, 337, 487, 538, 561
SsiI CCGC 1 cut(s) 585
SspI AATATT 1 cut(s) 41
SspMI CTAG 2 cut(s) 575, 582
StyD4I CCNGG 3 cut(s) 97, 98, 390
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 4 cut(s) 90, 218, 402, 508
TaqI TCGA 4 cut(s) 62, 92, 533, 645
TasI AATT 8 cut(s) 10, 158, 275, 282, 337, 487, 538, 561
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 2 cut(s) 172, 396
TseI GCWGC 2 cut(s) 269, 413
Tsp45I GTSAC 2 cut(s) 172, 396
TspDTI ATGAA 4 cut(s) 71, 290, 350, 586
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 1 cut(s) 573
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 3 cut(s) 158, 275, 282
XceI RCATGY 1 cut(s) 522
XmaI CCCGGG 1 cut(s) 98
XspI CTAG 2 cut(s) 575, 582
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.