Rmu_sc0001602.1_g000003

beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001602.1
OG0023074
Physical Location & Seq
Forward (+)
10128 .. 11695
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
atgtcttattctgactccctcgccattctctcccttcttttcttctcttcttcttcgtttctgctcaagctcagagatggccgctcagcccacctccgctgctccccaccaacagtctgcggcgcgaccacgtttgcaaagccatccaaatcatcctcgtttgctctgcctccgatcctcaaatcactaaacgccaacgcagacctccccctcccaattttagaaacgactccgctccggcgaggacatctcgtagatttctgggaccaagtcgaagttgcacctccaccgttagcttcctcacggcgaagtgaagcggagctcggtcctcccttcttcgaactagcagcgatgacggctggacgaaacccgaaagcttctcggggtttccgcacgggaacacatgtgaagggtcacttgatgtgggcgctgttggaatacctagagatgggatcgagctaccaagttcgattgggtctcaatttcacagattaccttaacaacttgaaccgaactgccaagaagtccgccggctggctcaaaacttccttgctttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

186

Amino Acids

20.38

Weight (kDa)

9.82

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 130 - 181 3.4e-07 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023074)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8144048.1_g000001 Rmu_sc0001602.1_g000003
rosa_samantha Rh2BG671800 Rh2BG672100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 84, 235
AccII CGCG 1 cut(s) 125
AciI CCGC 7 cut(s) 82, 97, 120, 233, 317, 391, 528
AclWI GGATC 2 cut(s) 169, 460
AcoI YGGCCR 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 448, 534
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 508
AluBI AGCT 5 cut(s) 70, 296, 322, 377, 459
AluI AGCT 5 cut(s) 70, 296, 322, 377, 459
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 169, 460
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 99, 347
AspLEI GCGC 2 cut(s) 125, 430
AspS9I GGNCC 2 cut(s) 265, 326
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 2 cut(s) 265, 326
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 86, 359
BccI CCATC 3 cut(s) 71, 151, 442
BceAI ACGGC 2 cut(s) 320, 372
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 3 cut(s) 344, 443, 559
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 4 cut(s) 82, 100, 121, 348
BlpI GCTNAGC 1 cut(s) 85
BlsI GCNGC 4 cut(s) 83, 101, 122, 349
Bme18I GGWCC 2 cut(s) 265, 326
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 265, 326
BmiI GGNNCC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 234, 266
Bpu1102I GCTNAGC 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 534
Bse118I RCCGGY 1 cut(s) 530
BseGI GGATG 2 cut(s) 143, 152
BseLI CCNNNNNNNGG 2 cut(s) 448, 534
BseMII CTCAG 2 cut(s) 85, 99
BseXI GCAGC 2 cut(s) 86, 359
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 238, 531
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 448, 534
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 174, 452
Bsp1720I GCTNAGC 1 cut(s) 85
BspACI CCGC 7 cut(s) 82, 97, 120, 233, 317, 391, 528
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 84, 98
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 2 cut(s) 169, 460
BspT104I TTCGAA 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 482
BsrBI CCGCTC 2 cut(s) 84, 235
BsrFI RCCGGY 1 cut(s) 530
BssAI RCCGGY 1 cut(s) 530
BssMI GATC 2 cut(s) 174, 452
Bst4CI ACNGT 2 cut(s) 115, 291
Bst6I CTCTTC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 532, 536
BstDEI CTNAG 2 cut(s) 71, 85
BstF5I GGATG 2 cut(s) 143, 152
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 125, 430
BstKTI GATC 2 cut(s) 177, 455
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 174, 452
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 407
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 86, 359
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 143, 152
Cac8I GCNNGC 2 cut(s) 532, 536
CfoI GCGC 2 cut(s) 125, 430
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 265, 326
CviAII CATG 1 cut(s) 404
DdeI CTNAG 2 cut(s) 71, 85
DpnI GATC 2 cut(s) 176, 454
DpnII GATC 2 cut(s) 174, 452
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 265, 326
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 1 cut(s) 407
FaiI YATR 1 cut(s) 405
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 82, 100, 121, 348
FokI GGATG 2 cut(s) 130, 139
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 4 cut(s) 82, 100, 121, 348
FspBI CTAG 3 cut(s) 344, 443, 559
GlaI GCGC 2 cut(s) 124, 429
GluI GCNGC 4 cut(s) 82, 100, 121, 348
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 238, 531
HhaI GCGC 2 cut(s) 125, 430
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 2 cut(s) 123, 428
HinP1I GCGC 2 cut(s) 123, 428
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 2 cut(s) 14, 229
HpaII CCGG 2 cut(s) 238, 531
Hpy188I TCNGA 3 cut(s) 13, 74, 174
HpyAV CCTTC 3 cut(s) 44, 343, 403
HpyCH4III ACNGT 2 cut(s) 115, 291
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 137, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 71, 85
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 2 cut(s) 123, 428
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 174, 452
LmnI GCTCC 3 cut(s) 107, 240, 319
LpnPI CCDG 5 cut(s) 247, 251, 345, 520, 544
Lsp1109I GCAGC 2 cut(s) 86, 359
MaeI CTAG 3 cut(s) 344, 443, 559
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 413
MalI GATC 2 cut(s) 176, 454
MbiI CCGCTC 2 cut(s) 84, 235
MboI GATC 2 cut(s) 174, 452
MboII GAAGA 5 cut(s) 34, 39, 42, 45, 328
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 216, 481
MlyI GAGTC 2 cut(s) 8, 223
MmeI TCCRAC 1 cut(s) 414
MroNI GCCGGC 1 cut(s) 530
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 2 cut(s) 238, 531
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 356
NaeI GCCGGC 1 cut(s) 532
NdeII GATC 2 cut(s) 174, 452
NgoMIV GCCGGC 1 cut(s) 530
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 407
NspV TTCGAA 1 cut(s) 339
PciI ACATGT 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 532
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 83, 101, 122, 349
PleI GAGTC 2 cut(s) 8, 223
PpsI GAGTC 2 cut(s) 8, 223
PscI ACATGT 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 265, 326
PsyI GACNNNGTC 1 cut(s) 269
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 4 cut(s) 82, 100, 121, 348
Sau3AI GATC 2 cut(s) 174, 452
Sau96I GGNCC 2 cut(s) 265, 326
SchI GAGTC 2 cut(s) 8, 223
SduI GDGCHC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 2 cut(s) 265, 326
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 216, 481
SsiI CCGC 7 cut(s) 82, 97, 120, 233, 317, 391, 528
SspMI CTAG 3 cut(s) 344, 443, 559
SstI GAGCTC 1 cut(s) 324
TaaI ACNGT 2 cut(s) 115, 291
TaiI ACGT 1 cut(s) 134
TaqI TCGA 4 cut(s) 273, 339, 455, 469
TaqII GACCGA 1 cut(s) 314
TasI AATT 2 cut(s) 216, 481
TauI GCSGC 2 cut(s) 84, 123
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 99, 347
Tsp45I GTSAC 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 265, 326
XceI RCATGY 1 cut(s) 407
XspI CTAG 3 cut(s) 344, 443, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.