Rh2BG672100

Beta-glucosidase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023074
Physical Location & Seq
Forward (+)
88360773 .. 88361692
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG672100.1

Sequence Viewer

Length: 480 bp
ATGGATGATTACCGGCACGCTACCGAGTCAAAGGTAGGACCAGATGGGGAGTACATAGGCGATGCGACACCAGGGAGCACTGAGATCTTCGTCTATCCAGATGGGCTGAGGAAGGGATTGATTTTAATGAAGGAACTTTACAACAATCCCAAAATCTACGTTACTGAGAATGGATATCCGGGCGCACGAGATGACACCATTCCAGTAGAAGAGGCTTTGATTGACGATGTTCGAATTCAGCACATCAAGGATCATCTCGCCGCTATCAAAGATGCCAGAGCTGCGGGAGTAGATGTCAACAGTTACATAATGTGGGCACTGATGGACTGCCTGGAGATGGGATCCCTATACGCAGTTCGATTCGGTCTCAACTACACTGATTATCTCAATGACTTGGCCAGAACTCCAAAGAAGTCCGCCGCCTGGCTCAAAGATTTCTTGGCTTCAACCACTTCAACCGCTACAACCACTTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

159

Amino Acids

17.63

Weight (kDa)

4.77

Isoelectric Point (pI)

17.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 27 - 148 9.9e-30 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023074)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8144048.1_g000001 Rmu_sc0001602.1_g000003
rosa_samantha Rh2BG671800 Rh2BG672100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 261, 284, 417, 420, 459
AclWI GGATC 3 cut(s) 258, 336, 349
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 337, 423
AgsI TTSAA 2 cut(s) 447, 456
AjnI CCWGG 3 cut(s) 70, 330, 422
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 3 cut(s) 258, 336, 349
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 180
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 398
BamHI GGATCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 268
BccI CCATC 4 cut(s) 38, 95, 316, 331
BciT130I CCWGG 3 cut(s) 72, 332, 424
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 371
BglII AGATCT 1 cut(s) 84
BisI GCNGC 3 cut(s) 261, 282, 420
BlsI GCNGC 3 cut(s) 262, 283, 421
Bme1390I CCNGG 4 cut(s) 72, 180, 332, 424
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 4 cut(s) 72, 180, 332, 424
BmsI GCATC 2 cut(s) 52, 262
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 423
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 3 cut(s) 72, 332, 424
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 337, 423
BseMII CTCAG 3 cut(s) 72, 98, 156
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 13, 179
BslI CCNNNNNNNGG 2 cut(s) 337, 423
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 80, 319
Bsp143I GATC 3 cut(s) 84, 250, 341
BspACI CCGC 5 cut(s) 261, 284, 417, 420, 459
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 3 cut(s) 73, 99, 157
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 3 cut(s) 258, 336, 349
BspT104I TTCGAA 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 3 cut(s) 84, 250, 341
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 72, 332, 424
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 81, 107, 165
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 87, 253, 344
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 84, 250, 341
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 3 cut(s) 72, 332, 424
BstSCI CCNGG 4 cut(s) 70, 178, 330, 422
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 84, 341
BstYI RGATCY 2 cut(s) 84, 341
BsuRI GGCC 1 cut(s) 398
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 3 cut(s) 78, 317, 375
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 6 cut(s) 106, 215, 281, 398, 427, 443
CviKI_1 RGCY 6 cut(s) 106, 215, 281, 398, 427, 443
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 3 cut(s) 81, 107, 165
DpnI GATC 3 cut(s) 86, 252, 343
DpnII GATC 3 cut(s) 84, 250, 341
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 3 cut(s) 70, 330, 422
EcoRV GATATC 1 cut(s) 176
FaiI YATR 3 cut(s) 56, 308, 349
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 261, 282, 420
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 261, 282, 420
GlaI GCGC 1 cut(s) 184
GluI GCNGC 3 cut(s) 261, 282, 420
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 13, 179
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 26, 360
HpaII CCGG 2 cut(s) 13, 179
Hpy166II GTNNAC 1 cut(s) 298
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 106, 124
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 81, 107, 165
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 3 cut(s) 84, 250, 341
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 52, 262
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 160, 302
MalI GATC 3 cut(s) 86, 252, 343
MboI GATC 3 cut(s) 84, 250, 341
MboII GAAGA 2 cut(s) 79, 221
MflI RGATCY 2 cut(s) 84, 341
MhlI GDGCHC 2 cut(s) 80, 319
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 102, 205
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MseI TTAA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 398
MspI CCGG 2 cut(s) 13, 179
MspR9I CCNGG 4 cut(s) 72, 180, 332, 424
MvaI CCWGG 3 cut(s) 72, 332, 424
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 180
NdeII GATC 3 cut(s) 84, 250, 341
NlaIV GGNNCC 1 cut(s) 343
NspV TTCGAA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 3 cut(s) 262, 283, 421
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 3 cut(s) 70, 330, 422
PspGI CCWGG 3 cut(s) 70, 330, 422
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 84, 341
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 3 cut(s) 261, 282, 420
Sau3AI GATC 3 cut(s) 84, 250, 341
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 4 cut(s) 72, 180, 332, 424
SduI GDGCHC 2 cut(s) 80, 319
SetI ASST 3 cut(s) 36, 162, 283
SfaNI GCATC 2 cut(s) 52, 262
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 38
Sse9I AATT 1 cut(s) 234
SsiI CCGC 5 cut(s) 261, 284, 417, 420, 459
StyD4I CCNGG 4 cut(s) 70, 178, 330, 422
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 232, 358
TaqII GACCGA 1 cut(s) 353
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 263, 422
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 3 cut(s) 85, 324, 382
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 3 cut(s) 85, 324, 382
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.