Rh2BG671800

Beta-glucosidase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023074
Physical Location & Seq
Forward (+)
88353973 .. 88354894
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG671800.1

Sequence Viewer

Length: 468 bp
ATGGATCAGTTCCAGCATGCTACCATCACAGTGGACGGATCAGATGGGGAGCCGATAGGCGCTGCAACACCAGGGAGCTCTGAGATCTACGTGTATCCAGAAGGGCTGAGAAAGGCACTGATTTTGCTGAAGCAATACAACAATCCCAAAATCTACATTACAGAGAATGGATATCCGGGAGCACGAGATGACACCCTTTCAGTAGAAGAGGCTTCGATTGACGATGTTCGAATTCAGCACATCAAGGATCATCTCGCCGCTGTCAAAGATGCCAGAGCTGCTGGAACAGATGTGCAGGGTTACCTGATGTGGGCACTGATGGACTGCCTGGAGATGGGATCCCTATACACAGTTCGATTCGGTCTCAACTACACTGATTATCTCAATGACTTGACCAGAACTCCAAAGAAGTCCGCCACCTGGCTCAAAGATTTCTTGGCTTCAACCACTACAACCACTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

4.82

Isoelectric Point (pI)

16.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 26 - 148 9.2e-30 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023074)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8144048.1_g000001 Rmu_sc0001602.1_g000003
rosa_samantha Rh2BG671800 Rh2BG672100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 258, 414
AclWI GGATC 5 cut(s) 12, 46, 255, 333, 346
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 310, 334, 420
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 2 cut(s) 444, 462
AjnI CCWGG 3 cut(s) 70, 327, 419
AluBI AGCT 2 cut(s) 78, 278
AluI AGCT 2 cut(s) 78, 278
Alw21I GWGCWC 2 cut(s) 80, 184
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 5 cut(s) 12, 46, 255, 333, 346
ApeKI GCWGC 2 cut(s) 62, 278
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 177
AsuII TTCGAA 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 316
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 80
BauI CACGAG 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 80, 184
BbvI GCAGC 2 cut(s) 49, 265
BccI CCATC 4 cut(s) 32, 38, 313, 328
BciT130I CCWGG 3 cut(s) 72, 329, 421
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 63
BfuI GTATCC 1 cut(s) 105
BglII AGATCT 1 cut(s) 84
BisI GCNGC 3 cut(s) 63, 258, 279
BlsI GCNGC 3 cut(s) 64, 259, 280
Bme1390I CCNGG 4 cut(s) 72, 177, 329, 421
BmiI GGNNCC 2 cut(s) 51, 340
BmrFI CCNGG 4 cut(s) 72, 177, 329, 421
BmsI GCATC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 350
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 334, 420
BseBI CCWGG 3 cut(s) 72, 329, 421
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 310, 334, 420
BseMII CTCAG 2 cut(s) 72, 98
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 2 cut(s) 49, 265
BsgI GTGCAG 1 cut(s) 314
BsiHKAI GWGCWC 2 cut(s) 80, 184
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 310, 334, 420
BsmAI GTCTC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 80, 184, 316
Bsp143I GATC 5 cut(s) 4, 38, 84, 247, 338
BspACI CCGC 2 cut(s) 258, 414
BspCNI CTCAG 2 cut(s) 73, 99
BspLI GGNNCC 2 cut(s) 51, 340
BspPI GGATC 5 cut(s) 12, 46, 255, 333, 346
BspT104I TTCGAA 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 5 cut(s) 4, 38, 84, 247, 338
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 72, 329, 421
Bst4CI ACNGT 2 cut(s) 31, 352
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 81, 107
BstEII GGTNACC 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 5 cut(s) 7, 41, 87, 250, 341
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 5 cut(s) 4, 38, 84, 247, 338
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 3 cut(s) 72, 329, 421
BstNSI RCATGY 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 4 cut(s) 70, 175, 327, 419
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 49, 265
BstX2I RGATCY 2 cut(s) 84, 338
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 2 cut(s) 84, 338
BsuI GTATCC 1 cut(s) 105
BtsIMutI CAGTG 4 cut(s) 36, 116, 314, 372
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 62
CviAII CATG 1 cut(s) 17
CviJI RGCY 7 cut(s) 52, 78, 106, 212, 278, 424, 440
CviKI_1 RGCY 7 cut(s) 52, 78, 106, 212, 278, 424, 440
DdeI CTNAG 2 cut(s) 81, 107
DpnI GATC 5 cut(s) 6, 40, 86, 249, 340
DpnII GATC 5 cut(s) 4, 38, 84, 247, 338
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EciI GGCGGA 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 78
EcoO65I GGTNACC 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 70, 327, 419
EcoRV GATATC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 1 cut(s) 20
FaiI YATR 2 cut(s) 18, 346
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 63, 258, 279
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 63, 258, 279
GlaI GCGC 1 cut(s) 61
GluI GCNGC 3 cut(s) 63, 258, 279
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 357
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 43, 82
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 31, 352
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 65, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 81, 107
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 5 cut(s) 4, 38, 84, 247, 338
LmnI GCTCC 3 cut(s) 49, 75, 179
Lsp1109I GCAGC 2 cut(s) 49, 265
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 6, 40, 86, 249, 340
MboI GATC 5 cut(s) 4, 38, 84, 247, 338
MboII GAAGA 1 cut(s) 218
MflI RGATCY 2 cut(s) 84, 338
MhlI GDGCHC 3 cut(s) 80, 184, 316
MluCI AATT 1 cut(s) 231
MnlI CCTC 1 cut(s) 202
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 4 cut(s) 72, 177, 329, 421
MvaI CCWGG 3 cut(s) 72, 329, 421
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 177
NdeII GATC 5 cut(s) 4, 38, 84, 247, 338
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 51, 340
NspI RCATGY 1 cut(s) 20
NspV TTCGAA 1 cut(s) 229
PaeI GCATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 3 cut(s) 64, 259, 280
Ppu21I YACGTR 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 3 cut(s) 70, 327, 419
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 3 cut(s) 70, 327, 419
PspN4I GGNNCC 2 cut(s) 51, 340
PsuI RGATCY 2 cut(s) 84, 338
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 80
SatI GCNGC 3 cut(s) 63, 258, 279
Sau3AI GATC 5 cut(s) 4, 38, 84, 247, 338
ScrFI CCNGG 4 cut(s) 72, 177, 329, 421
SduI GDGCHC 3 cut(s) 80, 184, 316
SetI ASST 5 cut(s) 80, 93, 280, 306, 422
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 29
SphI GCATGC 1 cut(s) 20
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 258, 414
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 4 cut(s) 70, 175, 327, 419
TaaI ACNGT 2 cut(s) 31, 352
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 215, 229, 355
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 357
TscAI CASTG 4 cut(s) 36, 123, 321, 379
TseI GCWGC 2 cut(s) 62, 278
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 4 cut(s) 36, 123, 321, 379
XapI RAATTY 1 cut(s) 231
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.