Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001617.1

Orthogroup ID

OG0025427

Physical Location & Seq

Genomic Coordinates Forward (+)

21363 .. 24549

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggcattttctctgaaacaccgccagtggctcctccacgtctacttacgccgccgccaaaagaggcctcactcctccttcttcgacactctcgtcgctaaggctcatcccaaggccgttaaggttgaagaggtggatagggatgagtatgtgagattgctggagaagaagaagaacaagaggaacaatgagtggtggtgcttctggaggtggatagccgggactacgcctttggaggtcctgaaagaggaagcagatagggcagaatctggtagggtagaggcagaagacgcaggaggtgtagaggcggcggagggtggctcgatttgggccaacattcactggaatcaagtcaccggccgccacccacctgacttctctaaaaacctcgctggatgttcccaaagagatcgtcagagatctaatagcctaatccatctccatgtctgccacaataagaagaacaagaagacgaggctgggtgcagacaccttatcttcatcctcgttggcgttctcattggctccaccttcttcatcttccagccccctctctctcgactctccccttccgagcccaatccctctatccctagatccttctcctccgttcgcgaccgaatcaacaccgcctctttcttcaccgacctttatgatcgtcgtcatcggtggcgtcggcttggttgggtcttacctcgttgataagttactctccagaggtaacgatgtgattgccatcgacaatttcttcacctggattaaagagaatgtggtgcaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

260

Amino Acids

29.15

Weight (kDa)

9.26

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025427)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035586
rosa_multiflora	Rmu_sc0001617.1_g000005 Rmu_sc0003454.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	614
AciI	CCGC	7 cut(s)	22, 52, 55, 308, 311, 361, 629
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	672
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	752
Alw21I	GWGCWC	1 cut(s)	777
Alw44I	GTGCAC	1 cut(s)	773
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	65, 114, 330, 358
ApaLI	GTGCAC	1 cut(s)	773
ArsI	GACNNNNNNTTYG	4 cut(s)	214, 246, 397, 429
AspS9I	GGNCC	2 cut(s)	238, 330
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	346, 633, 742
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	294, 476
Bbv12I	GWGCWC	1 cut(s)	777
BccI	CCATC	2 cut(s)	444, 743
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	4 cut(s)	52, 55, 309, 361
BlsI	GCNGC	4 cut(s)	53, 56, 310, 362
Bme1390I	CCNGG	2 cut(s)	220, 754
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	238, 330
BmiI	GGNNCC	2 cut(s)	32, 525
BmrFI	CCNGG	2 cut(s)	220, 754
BpiI	GAAGAC	2 cut(s)	294, 476
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	3 cut(s)	182, 226, 697
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	25, 347
Bse8I	GATNNNNATC	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	4 cut(s)	106, 148, 401, 500
BseJI	GATNNNNATC	1 cut(s)	734
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	25, 347
BseRI	GAGGAG	3 cut(s)	23, 64, 594
BseSI	GKGCMC	1 cut(s)	777
BseX3I	CGGCCG	1 cut(s)	358
BseYI	CCCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	1 cut(s)	614
Bsh1285I	CGRYCG	2 cut(s)	361, 618
BshFI	GGCC	4 cut(s)	67, 116, 332, 360
BsiEI	CGRYCG	2 cut(s)	361, 618
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	2 cut(s)	219, 357
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	67, 116, 332, 360
Bsp1286I	GDGCHC	2 cut(s)	578, 777
Bsp143I	GATC	4 cut(s)	409, 419, 595, 654
Bsp68I	TCGCGA	1 cut(s)	614
BspACI	CCGC	7 cut(s)	22, 52, 55, 308, 311, 361, 629
BspANI	GGCC	4 cut(s)	67, 116, 332, 360
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	2 cut(s)	32, 525
BspPI	GGATC	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	25, 347
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	409, 419, 595, 654
BssNI	GRCGYC	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	754
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	672
BstDEI	CTNAG	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	4 cut(s)	106, 148, 401, 500
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	4 cut(s)	412, 422, 598, 657
BstMBI	GATC	4 cut(s)	409, 419, 595, 654
BstMCI	CGRYCG	2 cut(s)	361, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 290
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	218, 752
BstSLI	GKGCMC	1 cut(s)	777
BstUI	CGCG	1 cut(s)	614
BstV2I	GAAGAC	2 cut(s)	294, 476
BstX2I	RGATCY	2 cut(s)	419, 595
BstYI	RGATCY	2 cut(s)	419, 595
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	67, 116, 332, 360
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	106, 148, 401, 500
BtsIMutI	CAGTG	2 cut(s)	32, 340
BtuMI	TCGCGA	1 cut(s)	614
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	238, 330
CseI	GACGC	2 cut(s)	299, 661
CviAII	CATG	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	4 cut(s)	411, 421, 597, 656
DpnII	GATC	4 cut(s)	409, 419, 595, 654
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	358
EagI	CGGCCG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	326
EclXI	CGGCCG	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	752
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	446
FaiI	YATR	3 cut(s)	150, 444, 653
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	52, 55, 309, 361
FokI	GGATG	4 cut(s)	93, 155, 408, 487
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	52, 55, 309, 361
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	4 cut(s)	52, 55, 309, 361
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	3 cut(s)	182, 226, 697
HaeIII	GGCC	4 cut(s)	67, 116, 332, 360
HapII	CCGG	2 cut(s)	219, 357
HgaI	GACGC	2 cut(s)	299, 661
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	446
HinfI	GANTC	4 cut(s)	266, 346, 560, 620
HpaII	CCGG	2 cut(s)	219, 357
HphI	GGTGA	3 cut(s)	346, 633, 742
Hpy166II	GTNNAC	2 cut(s)	43, 775
Hpy188I	TCNGA	3 cut(s)	15, 417, 573
Hpy188III	TCNNGA	5 cut(s)	205, 241, 557, 613, 714
Hpy8I	GTNNAC	2 cut(s)	43, 775
Hpy99I	CGWCG	3 cut(s)	98, 662, 677
HpyAV	CCTTC	4 cut(s)	88, 540, 578, 609
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	485, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 290
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	4 cut(s)	409, 419, 595, 654
LmnI	GCTCC	2 cut(s)	36, 529
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	352, 705, 719
MalI	GATC	4 cut(s)	411, 421, 597, 656
MboI	GATC	4 cut(s)	409, 419, 595, 654
MflI	RGATCY	2 cut(s)	419, 595
MhlI	GDGCHC	2 cut(s)	578, 777
MluCI	AATT	1 cut(s)	742
MlyI	GAGTC	1 cut(s)	554
MseI	TTAA	2 cut(s)	120, 759
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	2 cut(s)	219, 357
MspR9I	CCNGG	2 cut(s)	220, 754
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	260, 290
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	409, 419, 595, 654
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	32, 525
NmuCI	GTSAC	1 cut(s)	352
NruI	TCGCGA	1 cut(s)	614
PceI	AGGCCT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	266, 346, 620
PkrI	GCNGC	4 cut(s)	53, 56, 310, 362
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	32, 525
PspPI	GGNCC	2 cut(s)	238, 330
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	419, 595
RruI	TCGCGA	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	120, 759
SatI	GCNGC	4 cut(s)	52, 55, 309, 361
Sau3AI	GATC	4 cut(s)	409, 419, 595, 654
Sau96I	GGNCC	2 cut(s)	238, 330
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	220, 754
SduI	GDGCHC	2 cut(s)	578, 777
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	1 cut(s)	742
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	7 cut(s)	22, 52, 55, 308, 311, 361, 629
SspMI	CTAG	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	218, 752
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	84, 323, 558, 738
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	1 cut(s)	742
TauI	GCSGC	4 cut(s)	54, 57, 311, 363
TfiI	GAWTC	3 cut(s)	266, 346, 620
Tru1I	TTAA	2 cut(s)	120, 759
Tru9I	TTAA	2 cut(s)	120, 759
TscAI	CASTG	2 cut(s)	32, 347
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	489, 525
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	32, 347
VneI	GTGCAC	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.