Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0025515

Physical Location & Seq

Genomic Coordinates Reverse (-)

190845 .. 191358

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001670.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgacaggtcggagaatcggtgaattgcattatgtcaggggacatcattttttggaagaatggttgcaccggttagctacattagagccaaaccatatctcaccaatttcctatcacttgctggatccaaacatggcttccgaatcccccgactttccctatcaactacaggcaatggctcgtgctgcttctttgtgtcttcgtcaagatccagaattcagaccctcaatgtcaaagttaatcagagtactagaaggaggtgatccagtcgttcctattggcttggacttgaacacagttggtagtagaagtggccatttgcctggactaagctcacaaaggcagcctaaacccagaggaaaccactctcgtaaactttcacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.42

Weight (kDa)

9.42

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025515)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001670.1_g000039 Rmu_sc0026555.1_g000001 Rmu_sc0038631.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	119, 132, 203, 257
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	2 cut(s)	77, 333
AluI	AGCT	2 cut(s)	77, 333
AlwI	GGATC	4 cut(s)	119, 132, 203, 257
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	185, 343
ApoI	RAATTY	1 cut(s)	215
AsiGI	ACCGGT	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	32, 93, 272
BalI	TGGCCA	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	172, 355
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	186, 344
BlsI	GCNGC	2 cut(s)	187, 345
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	172, 355
BshFI	GGCC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	124, 208, 262
BspANI	GGCC	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	4 cut(s)	119, 132, 203, 257
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	69
BssMI	GATC	3 cut(s)	124, 208, 262
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	329
BstKTI	GATC	3 cut(s)	127, 211, 265
BstMBI	GATC	3 cut(s)	124, 208, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	172, 355
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	124, 208
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	2 cut(s)	124, 208
BsuRI	GGCC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	248
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	77, 88, 137, 179, 282, 315, 333, 346
CviKI_1	RGCY	8 cut(s)	77, 88, 137, 179, 282, 315, 333, 346
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	126, 210, 264
DpnII	GATC	3 cut(s)	124, 208, 262
EaeI	YGGCCR	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	33, 96, 134
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	186, 344
Fsp4HI	GCNGC	2 cut(s)	186, 344
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	186, 344
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	70
Hin1II	CATG	1 cut(s)	136
HinfI	GANTC	2 cut(s)	15, 143
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	3 cut(s)	32, 93, 272
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	12, 142, 221, 245
Hpy188III	TCNNGA	2 cut(s)	206, 212
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	28, 67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	124, 208, 262
LpnPI	CCDG	9 cut(s)	22, 83, 107, 155, 225, 279, 309, 336, 367
Lsp1109I	GCAGC	2 cut(s)	172, 355
MaeI	CTAG	1 cut(s)	251
MalI	GATC	3 cut(s)	126, 210, 264
MboI	GATC	3 cut(s)	124, 208, 262
MboII	GAAGA	2 cut(s)	68, 191
MflI	RGATCY	2 cut(s)	124, 208
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	3 cut(s)	23, 105, 215
MluNI	TGGCCA	1 cut(s)	315
MnlI	CCTC	3 cut(s)	235, 251, 350
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	3 cut(s)	124, 208, 262
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	15, 143
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	187, 345
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	124, 208
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	186, 344
Sau3AI	GATC	3 cut(s)	124, 208, 262
ScaI	AGTACT	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	4 cut(s)	10, 79, 262, 335
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	23, 105, 215
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	298
TasI	AATT	3 cut(s)	23, 105, 215
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	15, 143
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	2 cut(s)	185, 343
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.