Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038631.1

Orthogroup ID

OG0025515

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 849

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

gtatagtgcacagagacctcagaccgaacaatatccttctgacccacgattttgaacctctggttgcggactttgggcttgctagatggcactctgaatgggagaccagcactgaggaccggtgtattggaacttcaggttatcttgcaccagaatatatagacagtggtcaaattacacataaggtagatgtgtacgcatttggagttgttttgttggagcttatgacaggtcggagaatcggtgaattgcattatgtcaggggacatcattttttggaagaatggttgcaccggttagctacattagagccaaaccatatctcaccaatttcctatcacttgctggatccaaacatggcctccgaatcccccgactttccctatcaactacaggcaatggctcgtgctgcttccttgtgtcttcgtcgagatccagaattcagaccctcaatgtcaaaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.75

Weight (kDa)

5.75

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025515)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001670.1_g000039 Rmu_sc0026555.1_g000001 Rmu_sc0038631.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	3 cut(s)	343, 356, 427
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	196
AgeI	ACCGGT	2 cut(s)	119, 293
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	2 cut(s)	222, 301
AluI	AGCT	2 cut(s)	222, 301
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	8, 97
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	3 cut(s)	343, 356, 427
AoxI	GGCC	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	439
AsiGI	ACCGGT	2 cut(s)	119, 293
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	256, 317
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	348
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BauI	CACGAG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	8, 97
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	350
BoxI	GACNNNNGTC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	415
BsaI	GGTCTC	2 cut(s)	8, 97
BsaWI	WCCGGW	2 cut(s)	119, 293
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 258, 346, 376
Bse118I	RCCGGY	2 cut(s)	119, 293
Bse3DI	GCAATG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	33, 104
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	361
BshTI	ACCGGT	2 cut(s)	119, 293
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	120, 294
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	8, 97
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	2 cut(s)	8, 97
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	348, 432
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	32, 105
BspLI	GGNNCC	1 cut(s)	350
BspPI	GGATC	3 cut(s)	343, 356, 427
BspTNI	GGTCTC	2 cut(s)	8, 97
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	119, 293
BssAI	RCCGGY	2 cut(s)	119, 293
BssMI	GATC	2 cut(s)	348, 432
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	19, 113
BstKTI	GATC	2 cut(s)	351, 435
BstMAI	GTCTC	2 cut(s)	8, 97
BstMBI	GATC	2 cut(s)	348, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	348, 432
BstYI	RGATCY	2 cut(s)	348, 432
BsuRI	GGCC	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	110, 171
Cac8I	GCNNGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	119, 293
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	195
CspAI	ACCGGT	2 cut(s)	119, 293
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	6 cut(s)	78, 222, 301, 312, 361, 403
CviKI_1	RGCY	6 cut(s)	78, 222, 301, 312, 361, 403
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	19, 113
DpnI	GATC	2 cut(s)	350, 434
DpnII	GATC	2 cut(s)	348, 432
Eco31I	GGTCTC	2 cut(s)	8, 97
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	439
FaeI	CATG	1 cut(s)	360
FaiI	YATR	8 cut(s)	4, 158, 160, 182, 226, 257, 320, 358
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	120, 294
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	2 cut(s)	239, 367
HpaII	CCGG	2 cut(s)	120, 294
HphI	GGTGA	2 cut(s)	256, 317
Hpy166II	GTNNAC	2 cut(s)	9, 195
Hpy188I	TCNGA	6 cut(s)	22, 41, 96, 236, 366, 445
Hpy188III	TCNNGA	2 cut(s)	430, 436
Hpy8I	GTNNAC	2 cut(s)	9, 195
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	9, 148, 252, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	2 cut(s)	19, 113
Hsp92II	CATG	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	348, 432
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	83
MalI	GATC	2 cut(s)	350, 434
MboI	GATC	2 cut(s)	348, 432
MboII	GAAGA	2 cut(s)	292, 415
MflI	RGATCY	2 cut(s)	348, 432
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	173, 247, 329, 439
MmeI	TCCRAC	2 cut(s)	197, 214
MnlI	CCTC	5 cut(s)	28, 68, 108, 372, 459
MspI	CCGG	2 cut(s)	120, 294
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	2 cut(s)	348, 432
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	239, 367
PinAI	ACCGGT	2 cut(s)	119, 293
PkrI	GCNGC	1 cut(s)	411
PshAI	GACNNNNGTC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	348, 432
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	2 cut(s)	348, 432
Sau96I	GGNCC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	8 cut(s)	20, 60, 141, 188, 224, 234, 303, 464
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	4 cut(s)	173, 247, 329, 439
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	429
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	173, 247, 329, 439
TfiI	GAWTC	2 cut(s)	239, 367
TscAI	CASTG	2 cut(s)	117, 171
TseI	GCWGC	1 cut(s)	409
TspRI	CASTG	2 cut(s)	117, 171
VneI	GTGCAC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	439
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.