Rmu_sc0026555.1_g000001
NAC Family

Inactive protein kinase SELMODRAFT_444075-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026555.1
OG0025515
Physical Location & Seq
Forward (+)
1 .. 1115
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026555.1_g000001.1.cds

Sequence Viewer

Length: 572 bp
gtgtggcaggaaacagaactcccctggattacgagtcaaggctaaagatagctactggaactgctcgtggattaagatatcttcatgaagattgcagagtgggttgtatagtgcacagagacctcagaccgaacaatatccttctgacccacgattttgaacctctggttgcggactttgggcttgctagatggcactctgaatgggagaccagcactgaggaccggtgtattggaacttcagggtatcttgcaccagaatatatagacagtggtcaaattacacataaggtagatgtgtacgcatttggagttgttttgttggagcttatgacaggtcggagaatcggtgaattgcattatgtcaggggacatcattttttggaagaatggttgcaccggctagctacattagagccaaaccatatctcaccaatttcctatcacttgctggatccaaacatggcttccgaatcccccgactttccctatcaactacaggcaatggctcgtgctgcttctttgtgtcttcgtcaagatccagaattcagaccctcaatgtcaaaggtttga

Protein Analysis

189

Amino Acids

21.6

Weight (kDa)

5.98

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025515)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001670.1_g000039 Rmu_sc0026555.1_g000001 Rmu_sc0038631.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 3 cut(s) 448, 461, 532
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 301
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 3 cut(s) 52, 327, 406
AluI AGCT 3 cut(s) 52, 327, 406
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 113, 202
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 3 cut(s) 448, 461, 532
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 544
AsiGI ACCGGT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 361, 422
AsuNHI GCTAGC 1 cut(s) 402
AvaII GGWCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BauI CACGAG 2 cut(s) 65, 509
BbsI GAAGAC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 501
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 113, 202
BfaI CTAG 2 cut(s) 188, 403
BfmI CTRYAG 1 cut(s) 496
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 455
BmrFI CCNGG 1 cut(s) 25
BmtI GCTAGC 1 cut(s) 406
BoxI GACNNNNGTC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 520
BsaI GGTCTC 2 cut(s) 113, 202
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bse118I RCCGGY 2 cut(s) 224, 398
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 138, 209
BseNI ACTGG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 501
BshTI ACCGGT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 2 cut(s) 225, 399
BslFI GGGAC 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 113, 202
BsmFI GGGAC 1 cut(s) 383
Bso31I GGTCTC 2 cut(s) 113, 202
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 453, 537
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 2 cut(s) 137, 210
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 455
BspOI GCTAGC 1 cut(s) 406
BspPI GGATC 3 cut(s) 448, 461, 532
BspTNI GGTCTC 2 cut(s) 113, 202
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 2 cut(s) 224, 398
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 2 cut(s) 224, 398
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 453, 537
BssSI CACGAG 2 cut(s) 65, 509
Bst2BI CACGAG 2 cut(s) 65, 509
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 185, 404
BstDEI CTNAG 2 cut(s) 124, 218
BstKTI GATC 2 cut(s) 456, 540
BstMAI GTCTC 2 cut(s) 113, 202
BstMBI GATC 2 cut(s) 453, 537
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 1 cut(s) 25
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 520
BstX2I RGATCY 2 cut(s) 453, 537
BstYI RGATCY 2 cut(s) 453, 537
BtsIMutI CAGTG 2 cut(s) 215, 276
Cac8I GCNNGC 2 cut(s) 185, 404
CciI TCATGA 1 cut(s) 84
Cfr10I RCCGGY 2 cut(s) 224, 398
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 300
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 2 cut(s) 85, 462
CviJI RGCY 9 cut(s) 42, 52, 183, 327, 402, 406, 417, 466, 508
CviKI_1 RGCY 9 cut(s) 42, 52, 183, 327, 402, 406, 417, 466, 508
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 124, 218
DpnI GATC 2 cut(s) 455, 539
DpnII GATC 2 cut(s) 453, 537
Eco31I GGTCTC 2 cut(s) 113, 202
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 1 cut(s) 79
FaeI CATG 2 cut(s) 88, 465
FaiI YATR 9 cut(s) 86, 109, 263, 265, 287, 331, 362, 425, 463
FaqI GGGAC 1 cut(s) 383
FatI CATG 2 cut(s) 84, 461
Fnu4HI GCNGC 1 cut(s) 515
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 2 cut(s) 188, 403
GluI GCNGC 1 cut(s) 515
HapII CCGG 2 cut(s) 225, 399
Hin1II CATG 2 cut(s) 88, 465
HinfI GANTC 3 cut(s) 34, 344, 472
HpaII CCGG 2 cut(s) 225, 399
HphI GGTGA 2 cut(s) 361, 422
Hpy166II GTNNAC 2 cut(s) 114, 300
Hpy188I TCNGA 6 cut(s) 127, 146, 201, 341, 471, 550
Hpy188III TCNNGA 3 cut(s) 85, 535, 541
Hpy8I GTNNAC 2 cut(s) 114, 300
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 95, 114, 253, 357, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 2 cut(s) 124, 218
Hsp92II CATG 2 cut(s) 88, 465
Kzo9I GATC 2 cut(s) 453, 537
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 1 cut(s) 501
MaeI CTAG 2 cut(s) 188, 403
MalI GATC 2 cut(s) 455, 539
MboI GATC 2 cut(s) 453, 537
MboII GAAGA 4 cut(s) 73, 100, 397, 520
MflI RGATCY 2 cut(s) 453, 537
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 4 cut(s) 278, 352, 434, 544
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 302, 319
MnlI CCTC 4 cut(s) 133, 173, 213, 564
MseI TTAA 1 cut(s) 73
MspI CCGG 2 cut(s) 225, 399
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 514
NdeII GATC 2 cut(s) 453, 537
NheI GCTAGC 1 cut(s) 402
NlaIII CATG 2 cut(s) 88, 465
NlaIV GGNNCC 1 cut(s) 455
PagI TCATGA 1 cut(s) 84
PfeI GAWTC 2 cut(s) 344, 472
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 1 cut(s) 516
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PshAI GACNNNNGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 455
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 453, 537
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 73
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 2 cut(s) 453, 537
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 54, 125, 165, 293, 329, 339, 408, 569
SfcI CTRYAG 1 cut(s) 496
SinI GGWCC 1 cut(s) 222
Sse9I AATT 4 cut(s) 278, 352, 434, 544
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 188, 403
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 271
TaqII GACCGA 1 cut(s) 144
TasI AATT 4 cut(s) 278, 352, 434, 544
TfiI GAWTC 2 cut(s) 344, 472
Tru1I TTAA 1 cut(s) 73
Tru9I TTAA 1 cut(s) 73
TscAI CASTG 2 cut(s) 222, 276
TseI GCWGC 1 cut(s) 514
TspDTI ATGAA 2 cut(s) 73, 101
TspRI CASTG 2 cut(s) 222, 276
VneI GTGCAC 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 544
XspI CTAG 2 cut(s) 188, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.