Rmu_sc0001711.1_g000029

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001711.1
OG0025462
Physical Location & Seq
Reverse (-)
143932 .. 144596
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001711.1_g000029.1.cds

Sequence Viewer

Length: 249 bp
atggatgaattatcaactgaattagatttggagcgagaagggaagttgattatgtggaattggggatttgagggttggcccgatgaatcagggtcaggaagaacaagcgcgaagttcaacaagcgaagagggagaaaatgggcggcggagattcgtgaccagtgtcgcgtggttcgggtttggctcgggacgttccagacggaggaggaggcagccggggcttatgacatagaggcgatcaagttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

82

Amino Acids

9.56

Weight (kDa)

4.99

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025462)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001711.1_g000029 Rmu_ssc0000339.1_g000019
rosa_roxburghii Rroxscaffold_1G00022960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 110, 168
AciI CCGC 2 cut(s) 143, 146
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 217
BisI GCNGC 2 cut(s) 144, 213
BlsI GCNGC 2 cut(s) 145, 214
Bme1390I CCNGG 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 217
BoxI GACNNNNGTC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 1 cut(s) 224
Bsh1236I CGCG 2 cut(s) 110, 168
BshFI GGCC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 2 cut(s) 143, 146
BspANI GGCC 1 cut(s) 79
BspFNI CGCG 2 cut(s) 110, 168
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 110, 168
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 2 cut(s) 110, 168
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 167
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 78
CviJI RGCY 4 cut(s) 79, 184, 215, 221
CviKI_1 RGCY 4 cut(s) 79, 184, 215, 221
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EciI GGCGGA 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 185
FaiI YATR 3 cut(s) 53, 225, 230
FaqI GGGAC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 144, 213
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 144, 213
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 144, 213
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 110
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 2 cut(s) 86, 151
HpaII CCGG 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 96, 155, 187, 196
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 191
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 75, 81, 173, 209, 229
Lsp1109I GCAGC 1 cut(s) 224
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 2 cut(s) 111, 138
MluCI AATT 3 cut(s) 8, 20, 58
MnlI CCTC 6 cut(s) 64, 122, 196, 199, 202, 226
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 217
MvnI CGCG 2 cut(s) 110, 168
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 217
NdeII GATC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 86, 151
PkrI GCNGC 2 cut(s) 145, 214
PshAI GACNNNNGTC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 78
SatI GCNGC 2 cut(s) 144, 213
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 217
SetI ASST 1 cut(s) 194
Sse9I AATT 3 cut(s) 8, 20, 58
SsiI CCGC 2 cut(s) 143, 146
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 194
TasI AATT 3 cut(s) 8, 20, 58
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 86, 151
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 21, 99
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.