Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000339.1

Orthogroup ID

OG0025462

Physical Location & Seq

Genomic Coordinates Forward (+)

66886 .. 67372

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000339.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggatgaattatcaactgaattagacttggagcgagaagggaagttgattatgcggaattggggatttgagggttggcccgatgaatccgggtcacgaagaacaagcgcgaagttcaacaagcgaagagtaattttgggattgtttgatcgtgggttgtttttgcgtttgattttggttgtgggatttaatttttgtgactggcttaagattcgtgaccggtgtcgcttggttcgggtttggctcgggacgttccagacggaggaggaggcagccatggcttatgacacagaggcgatcaagtttcgaggagaaagagcagagacgtcttttatgagccgagagagagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

117

Amino Acids

13.9

Weight (kDa)

6.4

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025462)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001711.1_g000029 Rmu_ssc0000339.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	206
AgeI	ACCGGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	272
AsiGI	ACCGGT	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	3 cut(s)	278, 281, 324
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	90, 220
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	148, 297
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	148, 297
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	326
BstAFI	CTTAAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	151, 300
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	148, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	219
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	6 cut(s)	79, 205, 244, 275, 281, 339
CviKI_1	RGCY	6 cut(s)	79, 205, 244, 275, 281, 339
DpnI	GATC	2 cut(s)	150, 299
DpnII	GATC	2 cut(s)	148, 297
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	1 cut(s)	280
FaiI	YATR	4 cut(s)	53, 278, 285, 335
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	273
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	90, 220
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	86, 211
HpaII	CCGG	2 cut(s)	90, 220
Hpy188III	TCNNGA	4 cut(s)	96, 215, 247, 256
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	251, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpySE526I	ACGT	2 cut(s)	251, 326
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	148, 297
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	103, 187, 233, 269
Lsp1109I	GCAGC	1 cut(s)	284
MaeII	ACGT	2 cut(s)	251, 326
MaeIII	GTNAC	3 cut(s)	93, 197, 215
MalI	GATC	2 cut(s)	150, 299
MboI	GATC	2 cut(s)	148, 297
MboII	GAAGA	2 cut(s)	111, 138
MluCI	AATT	5 cut(s)	8, 20, 58, 132, 190
MnlI	CCTC	6 cut(s)	64, 256, 259, 262, 286, 302
MseI	TTAA	2 cut(s)	189, 207
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	2 cut(s)	90, 220
MspR9I	CCNGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	148, 297
NlaIII	CATG	1 cut(s)	280
NmuCI	GTSAC	3 cut(s)	93, 197, 215
PfeI	GAWTC	2 cut(s)	86, 211
PinAI	ACCGGT	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	189, 207
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	148, 297
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	2 cut(s)	254, 329
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	8, 20, 58, 132, 190
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	276
TaiI	ACGT	2 cut(s)	254, 329
TaqI	TCGA	1 cut(s)	307
TasI	AATT	5 cut(s)	8, 20, 58, 132, 190
TfiI	GAWTC	2 cut(s)	86, 211
Tru1I	TTAA	2 cut(s)	189, 207
Tru9I	TTAA	2 cut(s)	189, 207
TseFI	GTSAC	3 cut(s)	93, 197, 215
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	3 cut(s)	93, 197, 215
TspDTI	ATGAA	2 cut(s)	21, 99
TspGWI	ACGGA	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	206
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.