Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0025462

Physical Location & Seq

Genomic Coordinates Forward (+)

28423033 .. 28423877

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAGGTCGGGAAGAACAAGCACGAAGTTCAACAAGCGAAGAGAGGTCTTGGCTCAATCCAAGCGAGAATTTCTCGATGGGTTGCCCAATCCTGTGGTTATAGAGAAAATGTTGAAACGGAAGTACGGGGAGTGCAGCAGAGATTAGGGAGAAAATGGGCGGCGGAGATTCGTGACCAGCGTCGCGTGATTCGGGTTTGGCTCGGGACGTTCCGGACGGAGGAGGAGGCAGCCGGGGCTTATGATATAGAGGCAATCAAGTTCGAGGAGAGAGAGCGAGCCGTCTTTCGAGCGAGAGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

102

Amino Acids

12.02

Weight (kDa)

10.09

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	41 - 89	1.7e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0025462)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001711.1_g000029 Rmu_ssc0000339.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	2 cut(s)	161, 164
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	32, 116
Ama87I	CYCGRG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	136, 230
ApoI	RAATTY	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	148, 242
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	235
BisI	GCNGC	3 cut(s)	137, 162, 231
BlsI	GCNGC	3 cut(s)	138, 163, 232
Bme1390I	CCNGG	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseRI	GAGGAG	3 cut(s)	236, 239, 281
BseXI	GCAGC	2 cut(s)	148, 242
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	214, 234
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	213
BspACI	CCGC	2 cut(s)	161, 164
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	148, 242
BstXI	CCANNNNNNTGG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	279
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	5 cut(s)	54, 202, 233, 239, 281
CviKI_1	RGCY	5 cut(s)	54, 202, 233, 239, 281
CviQI	GTAC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	203
FaiI	YATR	3 cut(s)	102, 243, 248
FaqI	GGGAC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	137, 162, 231
Fsp4HI	GCNGC	3 cut(s)	137, 162, 231
GluI	GCNGC	3 cut(s)	137, 162, 231
HapII	CCGG	2 cut(s)	214, 234
HgaI	GACGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	169, 190
HpaII	CCGG	2 cut(s)	214, 234
Hpy188III	TCNNGA	5 cut(s)	10, 75, 173, 205, 214
Hpy99I	CGWCG	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	4, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	213
LpnPI	CCDG	4 cut(s)	106, 191, 227, 247
Lsp1109I	GCAGC	2 cut(s)	148, 242
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	173
MboII	GAAGA	2 cut(s)	25, 52
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	6 cut(s)	38, 214, 217, 220, 244, 259
MroI	TCCGGA	1 cut(s)	213
MspI	CCGG	2 cut(s)	214, 234
MspR9I	CCNGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	169, 190
PkrI	GCNGC	3 cut(s)	138, 163, 232
PshAI	GACNNNNGTC	1 cut(s)	180
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SatI	GCNGC	3 cut(s)	137, 162, 231
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	3 cut(s)	9, 49, 212
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	161, 164
StyD4I	CCNGG	1 cut(s)	233
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	76, 264, 289
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	169, 190
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	136, 230
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	134, 233
XapI	RAATTY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.