Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0020285

Physical Location & Seq

Genomic Coordinates Forward (+)

38950 .. 40422

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgttgatgaatgggttcaataccatcgaatacagtcaagatgagcaagcaagcccagccaactacaagaagaaacttcaagagaccctatcatatcccggaaatgctaacctgaaagcaggaataggtctgcaaagtcactttgccaccggtcagccaaaccttgcttacatgagatcaggtttagactttctaggtgcaacaggatttccaatatggcttacagaacctcagtatttggaagaggtaatgagggagggtttttctcatccggcggtccaagggatcataatgtttgctggtccagaggtagttgggtttactgagacgaacttcaagaacactccatcaggagatgttgtggataagctgatcaaggagtggaccgatgatcaaaggttcatagatgtttccttgtttcatggggagtatgaagttactgcaaaacacaatgtcaccaatgcttcagctactctaagctttaaggttgcaaaagctgaaccacaggcaattctgcattttcagatggatacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

178

Amino Acids

19.79

Weight (kDa)

5.03

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020285)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03740
rosa_multiflora	Rmu_sc0001716.1_g000011
rosa_roxburghii	Rroxscaffold_7G00211370
rosa_samantha	Rh6CG058000 Rh6DG054900
rosa_wichuraiana	Rw6G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	450
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	19, 80, 337
AluBI	AGCT	4 cut(s)	370, 470, 480, 497
AluI	AGCT	4 cut(s)	370, 470, 480, 497
Alw26I	GTCTC	2 cut(s)	77, 320
AlwI	GGATC	1 cut(s)	293
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	277, 302, 384
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	3 cut(s)	277, 302, 384
BccI	CCATC	3 cut(s)	32, 355, 520
BciVI	GTATCC	1 cut(s)	523
BclI	TGATCA	2 cut(s)	372, 391
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	77, 320
BfaI	CTAG	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	3 cut(s)	277, 302, 384
BmgT120I	GGNCC	3 cut(s)	277, 302, 384
BmrFI	CCNGG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse118I	RCCGGY	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	245, 315
BseYI	CCCAGC	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	99, 150, 272
BsmAI	GTCTC	2 cut(s)	77, 320
BsmBI	CGTCTC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	176, 285, 372, 391
BspACI	CCGC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	244, 316
BspPI	GGATC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	176, 285, 372, 391
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	48, 52
BstDEI	CTNAG	3 cut(s)	231, 324, 476
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	179, 288, 375, 394
BstMAI	GTCTC	2 cut(s)	77, 320
BstMBI	GATC	4 cut(s)	176, 285, 372, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	48, 52
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	277, 302, 384
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	2 cut(s)	172, 422
CviJI	RGCY	8 cut(s)	54, 59, 157, 220, 370, 470, 480, 497
CviKI_1	RGCY	8 cut(s)	54, 59, 157, 220, 370, 470, 480, 497
DdeI	CTNAG	3 cut(s)	231, 324, 476
DpnI	GATC	4 cut(s)	178, 287, 374, 393
DpnII	GATC	4 cut(s)	176, 285, 372, 391
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	277, 302, 384
Eco57I	CTGAAG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	175, 425
FaiI	YATR	7 cut(s)	94, 173, 217, 290, 404, 423, 432
FatI	CATG	2 cut(s)	171, 421
FbaI	TGATCA	2 cut(s)	372, 391
FokI	GGATG	1 cut(s)	255
FspBI	CTAG	1 cut(s)	194
GsaI	CCCAGC	1 cut(s)	59
HapII	CCGG	3 cut(s)	99, 150, 272
Hin1II	CATG	2 cut(s)	175, 425
HindIII	AAGCTT	1 cut(s)	478
HpaII	CCGG	3 cut(s)	99, 150, 272
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	321, 384
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	5 cut(s)	38, 80, 305, 337, 351
Hpy8I	GTNNAC	2 cut(s)	321, 384
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	5 cut(s)	133, 200, 443, 491, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	231, 324, 476
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	175, 425
Ksp22I	TGATCA	2 cut(s)	372, 391
Kzo9I	GATC	4 cut(s)	176, 285, 372, 391
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	3 cut(s)	137, 436, 454
MalI	GATC	4 cut(s)	178, 287, 374, 393
MboI	GATC	4 cut(s)	176, 285, 372, 391
MboII	GAAGA	2 cut(s)	82, 254
MluCI	AATT	1 cut(s)	510
MnlI	CCTC	5 cut(s)	238, 240, 246, 250, 301
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	483
MspI	CCGG	3 cut(s)	99, 150, 272
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	4 cut(s)	176, 285, 372, 391
NlaIII	CATG	2 cut(s)	175, 425
NmuCI	GTSAC	2 cut(s)	137, 454
PdmI	GAANNNNTTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	55
PspPI	GGNCC	3 cut(s)	277, 302, 384
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	4 cut(s)	176, 285, 372, 391
Sau96I	GGNCC	3 cut(s)	277, 302, 384
ScrFI	CCNGG	1 cut(s)	99
SinI	GGWCC	3 cut(s)	277, 302, 384
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	137, 454
Tsp45I	GTSAC	2 cut(s)	137, 454
TspDTI	ATGAA	4 cut(s)	23, 391, 410, 447
VpaK11BI	GGWCC	3 cut(s)	277, 302, 384
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.