Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0020285

Physical Location & Seq

Genomic Coordinates Forward (+)

9154943 .. 9156835

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGATGAATGGGTTCAATACCATCGAATACAGTCAAGATGAGCAAGCAAGCCCAGCCAACTACAAGAAGAAACTTCAAGAGACCCTATCATATCCCGGAAATGCTAACCTGAAAGCAGGAATAGGTCTGCAAAGTCACTTTGCCACCGGTCAGCCAAACCTTGCTTACATGAGATCAGGTTTAGACTTTCTAGGTGCAACAGGATTTCCAATATGGCTTACAGAAGTGTCGATCTGTTGGAAAATGAGAAAATCAGCCTCATTATTTGGAAGAGGTAATGAGGGAGGGTTTTTCTCATCCGGCGGTCCAAGGGATCATAATGTTTGCTGGTCCAGAGACAACCTTGTTGATCAGAACTTCAAGAACACTCCATCAGAAGATGTTGTGGATAAGCTGATCAAGGAGTGGACCGATGATCAAAGGTTCATAGATGTTTCCTTGTTTCATGGGGAGTATGAAGTTACTGCAAAACACAATGTCACCAATGCTTCAGCTACTCTAAGCTTTAAGGTTGCAAAAGCTGAACCACAGGCAATTCTGCATTTTCAGATGGATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

187

Amino Acids

20.89

Weight (kDa)

5.94

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020285)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03740
rosa_multiflora	Rmu_sc0001716.1_g000011
rosa_roxburghii	Rroxscaffold_7G00211370
rosa_samantha	Rh6CG058000 Rh6DG054900
rosa_wichuraiana	Rw6G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	477
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	19, 80, 364
AluBI	AGCT	4 cut(s)	397, 497, 507, 524
AluI	AGCT	4 cut(s)	397, 497, 507, 524
Alw26I	GTCTC	2 cut(s)	77, 333
AlwI	GGATC	1 cut(s)	324
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	308, 333, 411
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	3 cut(s)	308, 333, 411
BccI	CCATC	3 cut(s)	32, 382, 547
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	3 cut(s)	352, 399, 418
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	77, 333
BfaI	CTAG	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	3 cut(s)	308, 333, 411
BmgT120I	GGNCC	3 cut(s)	308, 333, 411
BmrFI	CCNGG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	99, 150, 303
BsmAI	GTCTC	2 cut(s)	77, 333
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
BspACI	CCGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	48, 52
BstDEI	CTNAG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	6 cut(s)	179, 237, 319, 355, 402, 421
BstMAI	GTCTC	2 cut(s)	77, 333
BstMBI	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	48, 52
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	308, 333, 411
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	2 cut(s)	172, 449
CviJI	RGCY	9 cut(s)	54, 59, 157, 220, 260, 397, 497, 507, 524
CviKI_1	RGCY	9 cut(s)	54, 59, 157, 220, 260, 397, 497, 507, 524
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	6 cut(s)	178, 236, 318, 354, 401, 420
DpnII	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	308, 333, 411
Eco57I	CTGAAG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	2 cut(s)	175, 452
FaiI	YATR	7 cut(s)	94, 173, 217, 321, 431, 450, 459
FatI	CATG	2 cut(s)	171, 448
FbaI	TGATCA	3 cut(s)	352, 399, 418
FokI	GGATG	1 cut(s)	286
FspBI	CTAG	1 cut(s)	194
GsaI	CCCAGC	1 cut(s)	59
HapII	CCGG	3 cut(s)	99, 150, 303
Hin1II	CATG	2 cut(s)	175, 452
HindIII	AAGCTT	1 cut(s)	505
HpaII	CCGG	3 cut(s)	99, 150, 303
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	357, 379, 552
Hpy188III	TCNNGA	4 cut(s)	38, 80, 336, 364
Hpy8I	GTNNAC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	5 cut(s)	133, 200, 470, 518, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	2 cut(s)	175, 452
Ksp22I	TGATCA	3 cut(s)	352, 399, 418
Kzo9I	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	3 cut(s)	137, 463, 481
MalI	GATC	6 cut(s)	178, 236, 318, 354, 401, 420
MboI	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
MboII	GAAGA	3 cut(s)	82, 285, 392
MluCI	AATT	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	269, 271, 277, 281
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	510
MspI	CCGG	3 cut(s)	99, 150, 303
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
NlaIII	CATG	2 cut(s)	175, 452
NmuCI	GTSAC	2 cut(s)	137, 481
PdmI	GAANNNNTTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	55
PspPI	GGNCC	3 cut(s)	308, 333, 411
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	6 cut(s)	176, 234, 316, 352, 399, 418
Sau96I	GGNCC	3 cut(s)	308, 333, 411
ScrFI	CCNGG	1 cut(s)	99
SinI	GGWCC	3 cut(s)	308, 333, 411
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	2 cut(s)	27, 233
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	2 cut(s)	137, 481
Tsp45I	GTSAC	2 cut(s)	137, 481
TspDTI	ATGAA	4 cut(s)	23, 418, 437, 474
VpaK11BI	GGWCC	3 cut(s)	308, 333, 411
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.