Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0020285

Physical Location & Seq

Genomic Coordinates Forward (+)

5828166 .. 5829197

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG058000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAAATGGTATAGCACTGAGGTAGTACAAGGCCAAGAAGACTATACTACCGTAGATGCCATGGTGAAATTTGCCAAACAGAATGGCAATTCTATTAGGGGTCACAATATCATCTGGGAAGATCCAAACATGCAGCCTCTCTGGCTTAAATCTCTTTCCTCCGAGGACATTGGAAAAGCAGCAGAAAGGAGATTCAATTCAGTGGTTCCTAGATATAAAGGACAATTAATTGCTTGGAATGCAGTCAATGAGAATCTCCGTTTCAGATTTTTCGATGATAAACTTGGCGAAAATGCTTCTGCATCATTCTTTTCCACTGCTCGACAGCTTGACCCTGACACTACTATGTTCATGAATGAGTTCAATACCATCGAATACAGTCAAGATGAGCGAGCAAGTCCAGCCAACTACGAGAAGAAACTTCAAGAGATCTTATCATATCCCGGAAATGCTAACCTGAAAGCAGGAATAGGTCTGCAAAGTCAATTTGCCACGAAGTGTGTTGGAAAATACGAAAATCAGCCTCAGTATTTGGAAGAGGTACTAAGGGAGGGTTTTTCTCATCCGGCGATCCATGGGATCATAATGTTTGCTGGTCCAGAGGTAGTTGGGTTTAATGAGACAACCCTTGCTGATCAGAACTTCAAGAACACTCCGTCAGGAGATGTTGTGGACAAGCTGATCAAGGAGTGGAAATCTGCAACTCAAGAAATCACAACCGATGATCAAGGGTTCATAGATGTTTCCTTGTTTCATGGGGAGTATGAAGTTACTGCAAAACACAATGTCACCAATGCTTCAGCTACTCTAAGCTTTAAGGTTGCAAAAGCTGAACCACAGGCAATTGTGCATTTTCAGATGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

289

Amino Acids

32.65

Weight (kDa)

5.09

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	1 - 181	2e-23	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020285)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03740
rosa_multiflora	Rmu_sc0001716.1_g000011
rosa_roxburghii	Rroxscaffold_7G00211370
rosa_samantha	Rh6CG058000 Rh6DG054900
rosa_wichuraiana	Rw6G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	116, 565, 587
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	783
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	27, 543
AgsI	TTSAA	4 cut(s)	196, 364, 425, 646
AluBI	AGCT	5 cut(s)	328, 679, 803, 813, 830
AluI	AGCT	5 cut(s)	328, 679, 803, 813, 830
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	116, 565, 587
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	133, 179
ApoI	RAATTY	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	76, 781
AvaII	GGWCC	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	145, 191
BccI	CCATC	2 cut(s)	377, 853
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	3 cut(s)	634, 681, 724
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	856
BglI	GCCNNNNNGGC	1 cut(s)	142
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	2 cut(s)	134, 180
BlsI	GCNGC	2 cut(s)	135, 181
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	46, 311
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	60, 162, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
BseDI	CCNNGG	3 cut(s)	60, 162, 574
BseGI	GGATG	1 cut(s)	562
BseMII	CTCAG	2 cut(s)	9, 539
BseXI	GCAGC	2 cut(s)	145, 191
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	444, 566
BsmAI	GTCTC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
Bsp19I	CCATGG	2 cut(s)	60, 574
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	10, 538
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	116, 565, 587
BssECI	CCNNGG	3 cut(s)	60, 162, 574
BssMI	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
BssT1I	CCWWGG	2 cut(s)	60, 574
Bst4CI	ACNGT	2 cut(s)	52, 380
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	18, 525, 545, 809
BstDSI	CCRYGG	2 cut(s)	60, 574
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	7 cut(s)	124, 432, 573, 582, 637, 684, 727
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 239, 401
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	145, 191
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	121, 429
BstYI	RGATCY	2 cut(s)	121, 429
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	2 cut(s)	60, 574
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	15, 207, 315
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	26, 542
CviAII	CATG	6 cut(s)	61, 130, 352, 575, 755, 867
CviQI	GTAC	2 cut(s)	26, 542
DdeI	CTNAG	4 cut(s)	18, 525, 545, 809
DpnI	GATC	7 cut(s)	123, 431, 572, 581, 636, 683, 726
DpnII	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
DraIII	CACNNNGTG	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	60, 574
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	60, 574
ErhI	CCWWGG	2 cut(s)	60, 574
FaeI	CATG	6 cut(s)	64, 133, 355, 578, 758, 870
FatI	CATG	6 cut(s)	60, 129, 351, 574, 754, 866
FbaI	TGATCA	3 cut(s)	634, 681, 724
Fnu4HI	GCNGC	2 cut(s)	134, 180
FokI	GGATG	1 cut(s)	549
Fsp4HI	GCNGC	2 cut(s)	134, 180
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	134, 180
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	2 cut(s)	444, 566
Hin1II	CATG	6 cut(s)	64, 133, 355, 578, 758, 870
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	2 cut(s)	192, 253
HpaII	CCGG	2 cut(s)	444, 566
HphI	GGTGA	2 cut(s)	76, 781
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	4 cut(s)	163, 266, 639, 858
Hpy188III	TCNNGA	7 cut(s)	352, 383, 425, 599, 646, 660, 707
Hpy8I	GTNNAC	1 cut(s)	673
HpyCH4III	ACNGT	2 cut(s)	52, 380
HpyCH4V	TGCA	8 cut(s)	133, 242, 302, 478, 701, 776, 824, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 239, 401
HpyF3I	CTNAG	4 cut(s)	18, 525, 545, 809
Hsp92II	CATG	6 cut(s)	64, 133, 355, 578, 758, 870
Ksp22I	TGATCA	3 cut(s)	634, 681, 724
Kzo9I	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
Lsp1109I	GCAGC	2 cut(s)	145, 191
LweI	GCATC	2 cut(s)	46, 311
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	101, 769, 787
MalI	GATC	7 cut(s)	123, 431, 572, 581, 636, 683, 726
MboI	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
MboII	GAAGA	4 cut(s)	50, 131, 427, 548
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	2 cut(s)	121, 429
MluCI	AATT	7 cut(s)	68, 88, 196, 224, 228, 485, 843
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	8 cut(s)	13, 147, 157, 169, 532, 534, 544, 595
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	147, 227, 615, 816
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	444, 566
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	142, 239, 401
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	2 cut(s)	60, 574
NdeII	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
NlaIII	CATG	6 cut(s)	64, 133, 355, 578, 758, 870
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	101, 787
NspI	RCATGY	1 cut(s)	133
PagI	TCATGA	1 cut(s)	351
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	192, 253
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	135, 181
PshBI	ATTAAT	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	121, 429
RsaI	GTAC	2 cut(s)	27, 543
RsaNI	GTAC	2 cut(s)	26, 542
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	4 cut(s)	147, 227, 615, 816
SatI	GCNGC	2 cut(s)	134, 180
Sau3AI	GATC	7 cut(s)	121, 429, 570, 579, 634, 681, 724
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	46, 311
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	7 cut(s)	68, 88, 196, 224, 228, 485, 843
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	2 cut(s)	60, 574
TaaI	ACNGT	2 cut(s)	52, 380
TaqI	TCGA	3 cut(s)	273, 322, 372
TasI	AATT	7 cut(s)	68, 88, 196, 224, 228, 485, 843
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	192, 253
Tru1I	TTAA	4 cut(s)	147, 227, 615, 816
Tru9I	TTAA	4 cut(s)	147, 227, 615, 816
TscAI	CASTG	3 cut(s)	22, 207, 322
TseFI	GTSAC	2 cut(s)	101, 787
TseI	GCWGC	2 cut(s)	133, 179
Tsp45I	GTSAC	2 cut(s)	101, 787
TspDTI	ATGAA	6 cut(s)	17, 340, 368, 724, 743, 780
TspGWI	ACGGA	2 cut(s)	248, 645
TspRI	CASTG	3 cut(s)	22, 207, 322
VpaK11BI	GGWCC	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.