Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0020285

Physical Location & Seq

Genomic Coordinates Reverse (-)

61830913 .. 61836174

Gene Structure 5262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAAGATTTCAACTATGATCTTCTTGTTACTAACAAGGAAAGTTGTCTGAAATTTCGGTCTGTGACAAAAAGCACTCCAAGCCTGCAGAGCAAAAAAACAGCAGTGGACATATGGGTGGACAGTGTCTCATTACAACCATTCACCAAGGAGGAATGGAGATCTCACCAAGACAAGAGCATCGATGAGGTATGTAAGAGTAAGGTGAGGATCCAGGTAACTGAGGGAGACAAAACTCCTCTGAGAAGTGCCAAAGTCTCCATCAAACAAACCAAGTCAAACTTCCCATTTGGCTGTGGCATGAACCATGACATCCTCACAAACACTGATTACCAGAACTGGTTTACATCAATATTTAAATTTACCACTTTCACCAACGAAATGAAATGGTATAGCACCAAGGTAGTACAAGGCCGAGAGGACTATACTACCGTAGATGCCATGGTGAAATTTGCCAAACAGAATGGCATTTCTTTTAGAGAGGTCACAATATCATCTGGCATGGGAAGATCCAAACATGCAGCCTCTCCGATTTTTCAAGATAAACTTGGCGAAAATGCTTCTGCATCATTCTTTTCCACTGCTCTACAGCTTGACCCTGACACTACTATGTTGATGAATGAGTTCAATACCATCAAATACAGTCTAGATGAGCAAGCAAGCCCAGCCAACTACAAGAAGAAACTTCAAGAGATCTTATCATATGCCGGAAATATTGCTAACCTGAAAGCAGGAATAGGTCTGCAAAGTCACTTTGCCACCGGTCAGCCAAACCTTGCTTACATGAGATCAGGTTTAGACTTTCTAGGTGCAACAGGATTTCCAATATGGCTTACAGAACCTCAGTATTTGGAAGAGGTACTGAGGGAGGGTTTTTGTCATCCGGCGGTCCAAGGGATCATAATGTTTGCTTGTCCAGAGGTAGTTGGGTTTAGTGAGACAACCCTTGCTGATCAGAACTTCAAGAACACGCCATCAGGAGATGTTGTGGATAAGCTGCTCAAGGAGTGGACCGATGATCAAGGGTTCATAGATGTTTCCTTGTTTCATGGGGAGTATGAAGTTACTGCAAAACACAATGTCACCAATGCTTCAGCTACAAGGTTCAAGGTTGCACAAGCTGAACCACAGGCAATTAATGCATTTTCAGATGGATACATGAAAAATCAGAATGACCCCCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

395

Amino Acids

44.32

Weight (kDa)

5.74

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	91 - 160	7e-08	Glycosyl hydrolase family 10
Glyco_hydro_10	PF00331	176 - 280	6.2e-06	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020285)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03740
rosa_multiflora	Rmu_sc0001716.1_g000011
rosa_roxburghii	Rroxscaffold_7G00211370
rosa_samantha	Rh6CG058000 Rh6DG054900
rosa_wichuraiana	Rw6G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	4 cut(s)	205, 218, 504, 905
AcsI	RAATTY	3 cut(s)	53, 359, 449
AcuI	CTGAAG	1 cut(s)	1077
AfaI	GTAC	2 cut(s)	408, 861
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	6 cut(s)	13, 539, 628, 689, 964, 1108
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	592, 997, 1097, 1121
AluI	AGCT	4 cut(s)	592, 997, 1097, 1121
Alw26I	GTCTC	4 cut(s)	133, 222, 262, 932
AlwI	GGATC	4 cut(s)	205, 218, 504, 905
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	521, 997
ApoI	RAATTY	3 cut(s)	53, 359, 449
AseI	ATTAAT	1 cut(s)	1137
AsiGI	ACCGGT	1 cut(s)	761
Asp700I	GAANNNNTTC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	889, 1011
AsuHPI	GGTGA	6 cut(s)	136, 158, 217, 364, 457, 1075
AvaII	GGWCC	2 cut(s)	889, 1011
BamHI	GGATCC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	533, 984
BccI	CCATC	4 cut(s)	269, 641, 982, 1145
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	1148
BclI	TGATCA	2 cut(s)	952, 1018
BcoDI	GTCTC	4 cut(s)	133, 222, 262, 932
BfaI	CTAG	2 cut(s)	647, 806
BfmI	CTRYAG	2 cut(s)	86, 587
BfuI	GTATCC	1 cut(s)	1148
BglII	AGATCT	2 cut(s)	161, 693
BisI	GCNGC	2 cut(s)	522, 998
BlsI	GCNGC	2 cut(s)	523, 999
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	889, 1011
BmgT120I	GGNCC	2 cut(s)	889, 1011
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	189, 427, 575
BpuEI	CTTGAG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	147, 399, 441, 892
BsaWI	WCCGGW	1 cut(s)	761
BsaXI	ACNNNNNCTCC	2 cut(s)	972, 1002
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	147, 399, 441, 892
BseGI	GGATG	2 cut(s)	312, 880
BseMII	CTCAG	4 cut(s)	213, 233, 854, 857
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	533, 984
BseYI	CCCAGC	1 cut(s)	664
BshFI	GGCC	1 cut(s)	414
BshTI	ACCGGT	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	708, 762, 884
BsmAI	GTCTC	4 cut(s)	133, 222, 262, 932
BsnI	GGCC	1 cut(s)	414
Bsp143I	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	4 cut(s)	214, 234, 855, 856
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	4 cut(s)	205, 218, 504, 905
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	4 cut(s)	147, 399, 441, 892
BssMI	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
BssT1I	CCWWGG	4 cut(s)	147, 399, 441, 892
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	125, 433, 644
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	1139
BstC8I	GCNNGC	3 cut(s)	86, 657, 661
BstDEI	CTNAG	4 cut(s)	222, 242, 843, 863
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	312, 880
BstKTI	GATC	9 cut(s)	22, 164, 213, 512, 696, 791, 900, 955, 1021
BstMAI	GTCTC	4 cut(s)	133, 222, 262, 932
BstMBI	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 90, 665, 1139
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	86, 587
BstV1I	GCAGC	2 cut(s)	533, 984
BstX2I	RGATCY	4 cut(s)	161, 210, 509, 693
BstYI	RGATCY	4 cut(s)	161, 210, 509, 693
Bsu15I	ATCGAT	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	1148
BsuRI	GGCC	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	312, 880
BtsI	GCAGTG	2 cut(s)	111, 579
BtsIMutI	CAGTG	4 cut(s)	111, 130, 324, 579
Cac8I	GCNNGC	3 cut(s)	86, 657, 661
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	889, 1011
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	407, 860
CspAI	ACCGGT	1 cut(s)	761
CviAII	CATG	8 cut(s)	301, 308, 442, 502, 518, 784, 1049, 1159
CviQI	GTAC	2 cut(s)	407, 860
DdeI	CTNAG	4 cut(s)	222, 242, 843, 863
DpnI	GATC	9 cut(s)	21, 163, 212, 511, 695, 790, 899, 954, 1020
DpnII	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	4 cut(s)	147, 399, 441, 892
Eco47I	GGWCC	2 cut(s)	889, 1011
Eco57I	CTGAAG	1 cut(s)	1077
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	4 cut(s)	147, 399, 441, 892
EcoT22I	ATGCAT	1 cut(s)	1144
ErhI	CCWWGG	4 cut(s)	147, 399, 441, 892
FaeI	CATG	8 cut(s)	304, 311, 445, 505, 521, 787, 1052, 1162
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 531, 563
FatI	CATG	8 cut(s)	300, 307, 441, 501, 517, 783, 1048, 1158
FauNDI	CATATG	2 cut(s)	113, 703
FbaI	TGATCA	2 cut(s)	952, 1018
Fnu4HI	GCNGC	2 cut(s)	522, 998
FokI	GGATG	2 cut(s)	299, 867
Fsp4HI	GCNGC	2 cut(s)	522, 998
FspBI	CTAG	2 cut(s)	647, 806
GluI	GCNGC	2 cut(s)	522, 998
GsaI	CCCAGC	1 cut(s)	668
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	3 cut(s)	708, 762, 884
Hin1II	CATG	8 cut(s)	304, 311, 445, 505, 521, 787, 1052, 1162
HpaII	CCGG	3 cut(s)	708, 762, 884
HphI	GGTGA	6 cut(s)	136, 158, 217, 364, 457, 1075
Hpy166II	GTNNAC	4 cut(s)	109, 121, 345, 1011
Hpy188I	TCNGA	6 cut(s)	51, 243, 531, 957, 1150, 1170
Hpy188III	TCNNGA	6 cut(s)	539, 647, 689, 917, 964, 978
Hpy8I	GTNNAC	4 cut(s)	109, 121, 345, 1011
HpyCH4III	ACNGT	3 cut(s)	125, 433, 644
HpyCH4V	TGCA	8 cut(s)	88, 521, 566, 745, 812, 1070, 1115, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 90, 665, 1139
HpyF3I	CTNAG	4 cut(s)	222, 242, 843, 863
Hsp92II	CATG	8 cut(s)	304, 311, 445, 505, 521, 787, 1052, 1162
Ksp22I	TGATCA	2 cut(s)	952, 1018
Kzo9I	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
Lsp1109I	GCAGC	2 cut(s)	533, 984
LweI	GCATC	3 cut(s)	189, 427, 575
MaeI	CTAG	2 cut(s)	647, 806
MaeIII	GTNAC	7 cut(s)	28, 64, 217, 484, 749, 1063, 1081
MalI	GATC	9 cut(s)	21, 163, 212, 511, 695, 790, 899, 954, 1020
MboI	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
MboII	GAAGA	5 cut(s)	14, 17, 519, 691, 866
MflI	RGATCY	4 cut(s)	161, 210, 509, 693
MluCI	AATT	5 cut(s)	53, 359, 449, 1134, 1183
Mph1103I	ATGCAT	1 cut(s)	1144
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	3 cut(s)	357, 1137, 1186
MslI	CAYNNNNRTG	2 cut(s)	116, 608
MspI	CCGG	3 cut(s)	708, 762, 884
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	81, 90, 665, 1139
NcoI	CCATGG	1 cut(s)	441
NdeI	CATATG	2 cut(s)	113, 703
NdeII	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
NlaIII	CATG	8 cut(s)	304, 311, 445, 505, 521, 787, 1052, 1162
NlaIV	GGNNCC	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	4 cut(s)	64, 484, 749, 1081
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	761
PkrI	GCNGC	2 cut(s)	523, 999
PshBI	ATTAAT	1 cut(s)	1137
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	889, 1011
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	4 cut(s)	161, 210, 509, 693
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	408, 861
RsaNI	GTAC	2 cut(s)	407, 860
RseI	CAYNNNNRTG	2 cut(s)	116, 608
SaqAI	TTAA	3 cut(s)	357, 1137, 1186
SatI	GCNGC	2 cut(s)	522, 998
Sau3AI	GATC	9 cut(s)	19, 161, 210, 509, 693, 788, 897, 952, 1018
Sau96I	GGNCC	2 cut(s)	889, 1011
ScrFI	CCNGG	1 cut(s)	215
SfaNI	GCATC	3 cut(s)	189, 427, 575
SfcI	CTRYAG	2 cut(s)	86, 587
SinI	GGWCC	2 cut(s)	889, 1011
SmiI	ATTTAAAT	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	116, 608
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
Sse9I	AATT	5 cut(s)	53, 359, 449, 1134, 1183
SsiI	CCGC	1 cut(s)	887
SspI	AATATT	2 cut(s)	354, 715
SspMI	CTAG	2 cut(s)	647, 806
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	4 cut(s)	147, 399, 441, 892
SwaI	ATTTAAAT	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	125, 433, 644
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	2 cut(s)	48, 1028
TasI	AATT	5 cut(s)	53, 359, 449, 1134, 1183
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	357, 1137, 1186
Tru9I	TTAA	3 cut(s)	357, 1137, 1186
TscAI	CASTG	4 cut(s)	111, 130, 331, 586
TseFI	GTSAC	4 cut(s)	64, 484, 749, 1081
TseI	GCWGC	2 cut(s)	521, 997
Tsp45I	GTSAC	4 cut(s)	64, 484, 749, 1081
TspDTI	ATGAA	7 cut(s)	317, 398, 632, 1018, 1037, 1074, 1175
TspRI	CASTG	4 cut(s)	111, 130, 331, 586
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	889, 1011
VspI	ATTAAT	1 cut(s)	1137
XapI	RAATTY	3 cut(s)	53, 359, 449
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	2 cut(s)	647, 806
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.