Rmu_sc0001761.1_g000001

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001761.1
OG0018039
Physical Location & Seq
Reverse (-)
583 .. 1071
489 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
atggaagttgcaaaggctgaaacaccaacgccatcgacgttcttcgaagctgccactaaaaagagaaaagcgacggaagaactggacgccgatcatgatgcaaggctgcgatggaaatttgctaaggagctgaggctctgtgacgcttggtacatgaaaaggctcaacggcagtgatgttagcaaaagccggaaaaagctggcggtgagcaagacctgggtggttgagcaggtcttgactttcttcgccgctagcgctgccgcgagagtcgagcgtggtgagagtgagagagttattgttcacgactgtgagcaagactcactccatgtgttgtatttgaagaagctgaaaacggggaggttcgtctttgttgggaggtggaaagatgactttgtgattaggagaaatttgaagaagggcgatgatattggtctgtgttggcacggagacgaatccatgttcagttttactgctttttatcggaactag

Protein Analysis

162

Amino Acids

18.81

Weight (kDa)

9.38

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018039)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12131
rosa_laevigata RLG00000004913
rosa_multiflora Rmu_sc0001761.1_g000001 Rmu_sc0030883.1_g000001
rosa_roxburghii Rroxscaffold_3G00268940
rosa_rugosa Rorug06G0469000
rosa_samantha Rh7AG073700 Rh7BG074000 Rh7CG074200 Rh7DG074100
rosa_wichuraiana Rw7G006160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 203, 249, 261
AcsI RAATTY 2 cut(s) 116, 406
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 2 cut(s) 340, 412
AjnI CCWGG 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 4 cut(s) 50, 130, 199, 346
AluI AGCT 4 cut(s) 50, 130, 199, 346
Alw26I GTCTC 1 cut(s) 441
Aor51HI AGCGCT 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 50, 106, 257
ApoI RAATTY 2 cut(s) 116, 406
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 217, 290
AsuII TTCGAA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 37, 93, 244
BccI CCATC 2 cut(s) 40, 105
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 252, 487
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 5 cut(s) 51, 107, 249, 258, 261
BlsI GCNGC 5 cut(s) 52, 108, 250, 259, 262
Bme1390I CCNGG 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu10I CCTNAGC 2 cut(s) 123, 131
Bpu14I TTCGAA 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 37, 93, 244
Bsh1236I CGCG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 3 cut(s) 203, 249, 261
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 263
BspHI TCATGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 201, 253
BstDEI CTNAG 2 cut(s) 123, 131
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 254, 257
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 37, 93, 244
BtgZI GCGATG 2 cut(s) 124, 435
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 201, 253
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 257
CseI GACGC 2 cut(s) 95, 152
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 95, 154, 326, 457
CviJI RGCY 9 cut(s) 17, 50, 106, 130, 136, 163, 189, 199, 346
CviKI_1 RGCY 9 cut(s) 17, 50, 106, 130, 136, 163, 189, 199, 346
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 123, 131
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 4 cut(s) 98, 157, 329, 460
FaiI YATR 4 cut(s) 96, 155, 327, 458
FatI CATG 4 cut(s) 94, 153, 325, 456
Fnu4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Fsp4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
FspBI CTAG 2 cut(s) 252, 487
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 51, 107, 249, 258, 261
HaeII RGCGCY 1 cut(s) 258
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 95, 152
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 98, 157, 329, 460
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 3 cut(s) 267, 317, 452
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 217, 290
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 3 cut(s) 95, 235, 302
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 40, 76
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 11, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 257
HpyF3I CTNAG 2 cut(s) 123, 131
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 98, 157, 329, 460
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 6 cut(s) 68, 185, 202, 203, 215, 229
Lsp1109I GCAGC 3 cut(s) 37, 93, 244
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 252, 487
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 5 cut(s) 34, 89, 235, 352, 424
MluCI AATT 2 cut(s) 116, 406
MlyI GAGTC 2 cut(s) 276, 311
MnlI CCTC 3 cut(s) 126, 351, 369
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 254, 257
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 98, 157, 329, 460
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 5 cut(s) 52, 108, 250, 259, 262
PleI GAGTC 2 cut(s) 275, 311
PpsI GAGTC 2 cut(s) 275, 311
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 2 cut(s) 276, 311
ScrFI CCNGG 1 cut(s) 217
SetI ASST 9 cut(s) 41, 52, 132, 201, 218, 234, 348, 362, 380
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 116, 406
SsiI CCGC 3 cut(s) 203, 249, 261
SspMI CTAG 2 cut(s) 252, 487
StyD4I CCNGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 35, 45, 270
TasI AATT 2 cut(s) 116, 406
TauI GCSGC 2 cut(s) 251, 263
TfiI GAWTC 1 cut(s) 452
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 50, 106, 257
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 89, 459
TspRI CASTG 1 cut(s) 178
XapI RAATTY 2 cut(s) 116, 406
XspI CTAG 2 cut(s) 252, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.