Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001862.1

Orthogroup ID

OG0025519

Physical Location & Seq

Genomic Coordinates Reverse (-)

49317 .. 50379

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001862.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgaatgccaatgcaaatcttgctagaactcctccaaaggctaattctccattagcttttggaaattcagagtctattgcaccaggtgatatcttcttctctcgtgagtgcaaaatcttgtcactgcccaaaactgtcaatcccgtaccaaaaccaaagaatggtattggttttgagaaccgcttaattactcctaatgtcaaaattgctacccaaggaggaaatggtttcgatcagaatgctcgagggactccattaagctacaatttgtcacaggcaaccacaacaacatcaagctcagcattgagcaggcaaagcagtaagatgagtggtacaagtggtagcacaactgcgagtgccaagaaattcacagcaagcagaaagaaaagcgaaagtcactcactgtatgcttgtatgagaaagggagagtcttgtcggaaaacaaaatcacctgagcattctcctgttttcaatgaagcttcccttatacagaaagcgcttgtggtttttcgtctacggcagttttgggctgataagcatcgactggcttcgttgaatggattcacttcccacaagcaagaaactcaacttctcgaagatctggtcgttgacaataaatttctctcaagcattgacattttgtttactagaccatctggttctgggaaaaaagctctaaaaatggctttccaaagagagagatatggtgatgcaagctgggaagtacctcatgatttaagatacttccagattcaggtattctgtactcaaagagatattgaactgaagaacaactatcaactttgcaactttgaaatattagttaagccttggattttgcaagttgttcctaggaacttacgttatcaatctagtgaacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2 NmrA

Protein Analysis

294

Amino Acids

32.85

Weight (kDa)

9.88

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025519)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001862.1_g000010 Rmu_sc0007698.1_g000007
rosa_wichuraiana	Rw2G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	64, 365, 617
AcuI	CTGAAG	1 cut(s)	806
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	147, 334, 726, 766
AfeI	AGCGCT	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	161, 754
AgsI	TTSAA	4 cut(s)	472, 556, 782, 815
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	6 cut(s)	56, 261, 297, 479, 674, 717
AluI	AGCT	6 cut(s)	56, 261, 297, 479, 674, 717
Ama87I	CYCGRG	1 cut(s)	243
Aor51HI	AGCGCT	1 cut(s)	498
ApoI	RAATTY	3 cut(s)	64, 365, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
Asp700I	GAANNNNTTC	1 cut(s)	560
AspA2I	CCTAGG	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	499
AsuHPI	GGTGA	3 cut(s)	98, 441, 719
AvaI	CYCGRG	1 cut(s)	243
AvrII	CCTAGG	1 cut(s)	851
BauI	CACGAG	1 cut(s)	102
BccI	CCATC	1 cut(s)	661
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	84
BfaI	CTAG	4 cut(s)	24, 648, 852, 873
BfoI	RGCGCY	1 cut(s)	500
BglII	AGATCT	1 cut(s)	598
BlnI	CCTAGG	1 cut(s)	851
BlpI	GCTNAGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	547, 700
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	214, 830, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 754
Bse1I	ACTGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	214, 830, 851
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	161, 754
BseMII	CTCAG	2 cut(s)	312, 444
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	161, 754
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	3 cut(s)	10, 244, 457
BsoBI	CYCGRG	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	232, 598
Bsp1720I	GCTNAGC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	181
BspCNI	CTCAG	2 cut(s)	311, 445
BspHI	TCATGA	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	214, 830, 851
BssMI	GATC	2 cut(s)	232, 598
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	3 cut(s)	214, 830, 851
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	136, 405
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	311, 376, 715
BstDEI	CTNAG	2 cut(s)	298, 453
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	235, 601
BstMBI	GATC	2 cut(s)	232, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 315
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 401
Cac8I	GCNNGC	3 cut(s)	311, 376, 715
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	499
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	146, 333, 725, 765
CviAII	CATG	1 cut(s)	731
CviQI	GTAC	4 cut(s)	146, 333, 725, 765
DdeI	CTNAG	2 cut(s)	298, 453
DpnI	GATC	2 cut(s)	234, 600
DpnII	GATC	2 cut(s)	232, 598
DraIII	CACNNNGTG	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	214, 830, 851
Eco32I	GATATC	1 cut(s)	91
Eco47III	AGCGCT	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	214, 830, 851
ErhI	CCWWGG	3 cut(s)	214, 830, 851
FaeI	CATG	1 cut(s)	734
FaiI	YATR	5 cut(s)	408, 416, 488, 705, 732
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	514
FspBI	CTAG	4 cut(s)	24, 648, 852, 873
GlaI	GCGC	1 cut(s)	498
GsaI	CCCAGC	1 cut(s)	721
HaeII	RGCGCY	1 cut(s)	500
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	1 cut(s)	734
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	5 cut(s)	71, 250, 428, 561, 751
HphI	GGTGA	3 cut(s)	98, 441, 719
Hpy166II	GTNNAC	4 cut(s)	515, 610, 645, 878
Hpy188I	TCNGA	3 cut(s)	70, 237, 438
Hpy188III	TCNNGA	4 cut(s)	104, 593, 731, 748
Hpy8I	GTNNAC	4 cut(s)	515, 610, 645, 878
HpyCH4III	ACNGT	2 cut(s)	136, 405
HpyCH4IV	ACGT	1 cut(s)	862
HpyCH4V	TGCA	6 cut(s)	14, 80, 111, 713, 807, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 315
HpyF3I	CTNAG	2 cut(s)	298, 453
HpySE526I	ACGT	1 cut(s)	862
Hsp92II	CATG	1 cut(s)	734
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	232, 598
LweI	GCATC	2 cut(s)	547, 700
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	4 cut(s)	24, 648, 852, 873
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	3 cut(s)	120, 270, 395
MalI	GATC	2 cut(s)	234, 600
MboI	GATC	2 cut(s)	232, 598
MboII	GAAGA	4 cut(s)	85, 88, 608, 799
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	7 cut(s)	43, 64, 186, 204, 265, 365, 617
MlyI	GAGTC	3 cut(s)	80, 244, 437
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	4 cut(s)	42, 212, 239, 738
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	4 cut(s)	185, 257, 737, 825
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	3 cut(s)	10, 244, 457
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	20, 315
NdeII	GATC	2 cut(s)	232, 598
NlaIII	CATG	1 cut(s)	734
NmuCI	GTSAC	3 cut(s)	120, 270, 395
PaeR7I	CTCGAG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	730
PctI	GAATGC	3 cut(s)	10, 244, 457
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	561, 751
PflMI	CCANNNNNTGG	1 cut(s)	161
PleI	GAGTC	3 cut(s)	79, 244, 436
PpsI	GAGTC	3 cut(s)	79, 244, 436
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	4 cut(s)	147, 334, 726, 766
RsaNI	GTAC	4 cut(s)	146, 333, 725, 765
SaqAI	TTAA	4 cut(s)	185, 257, 737, 825
Sau3AI	GATC	2 cut(s)	232, 598
SchI	GAGTC	3 cut(s)	80, 244, 437
ScrFI	CCNGG	1 cut(s)	84
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	547, 700
Sfr274I	CTCGAG	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	243, 625
SmoI	CTYRAG	2 cut(s)	243, 625
Sse9I	AATT	7 cut(s)	43, 64, 186, 204, 265, 365, 617
SsiI	CCGC	1 cut(s)	181
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	4 cut(s)	24, 648, 852, 873
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	3 cut(s)	214, 830, 851
TaaI	ACNGT	2 cut(s)	136, 405
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	4 cut(s)	231, 244, 541, 594
TasI	AATT	7 cut(s)	43, 64, 186, 204, 265, 365, 617
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	561, 751
Tru1I	TTAA	4 cut(s)	185, 257, 737, 825
Tru9I	TTAA	4 cut(s)	185, 257, 737, 825
TscAI	CASTG	2 cut(s)	129, 408
TseFI	GTSAC	3 cut(s)	120, 270, 395
Tsp45I	GTSAC	3 cut(s)	120, 270, 395
TspDTI	ATGAA	2 cut(s)	17, 489
TspRI	CASTG	2 cut(s)	129, 408
Van91I	CCANNNNNTGG	1 cut(s)	161
XapI	RAATTY	3 cut(s)	64, 365, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	243
XmaJI	CCTAGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	4 cut(s)	24, 648, 852, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.