Rw2G011280

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0025519
Physical Location & Seq
Reverse (-)
11404149 .. 11405063
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011280.1

Sequence Viewer

Length: 741 bp
ATGAATGCCAATGCAAAGCTTGCTAGAACTCCTCCAAAGGCTAATTCTCCACTAGCTTTTGGAAGTTCAGAGTCTATTGCACCAGGTGATATCTTCTTCTCTCGTGAGTGCAAAATCTTGGCACTGCCCAAAACTGTCAATCCCGTACCAAAACCAAAGAATGGTATTGGTTTTGAGAACCGCTTAATTACTCCTAATGTCAAAATTGCTACCCAAAGAGGAAATGGTTTCGATCAGAATGCTCGAGGGACTCCATTAAGCTACAATTTGTCACAGGCAACCACAACAACATCAAGCTCAGCATTGAGCAGGCAAAGCAGTAAGATGAGTGGTACAAGTGGTAGCACAACTGCGAGTGCCAAGAAATTCACAGCAAGCAGAAAGAAAAGCGAAAGTCACTCACTGTATGCTTGTATGAGAAAGGGAGAGTCTTGTCGGAAAACAAAATCACCTGAGCATTCTCCTGTTTTCAATGAAGCTTCCCTTATACAGAAAGCGCTTGTGGTTTTTCGTCTACGGCAGTTTTGGGCTGATAAGCATCGACTGGCTTCTTTGAATGGATTCACTTCCCACAAGCAAGAAACTCAACTTCTCGAGGATCTGGTCGTTGACAATAAATTTCTCTCAAGCATCGACATTTTGTCTACTGGACCATCTGGTTCTGGGAAAAAAGCTCTAAAAATGGCTTTCCTAAGAGAGAGAGATACGGTGATGCAAGCTGGGAAGTACCTCATGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
DNA_pol3_delta2 NmrA

Protein Analysis

246

Amino Acids

26.77

Weight (kDa)

10.2

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025519)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001862.1_g000010 Rmu_sc0007698.1_g000007
rosa_wichuraiana Rw2G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 2 cut(s) 514, 644
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 606
AcsI RAATTY 2 cut(s) 365, 617
AdeI CACNNNGTG 1 cut(s) 86
AfaI GTAC 3 cut(s) 147, 334, 728
AfeI AGCGCT 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 472, 556
AhdI GACNNNNNGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 82
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 7 cut(s) 19, 56, 261, 297, 479, 674, 719
AluI AGCT 7 cut(s) 19, 56, 261, 297, 479, 674, 719
AlwI GGATC 1 cut(s) 606
Ama87I CYCGRG 2 cut(s) 243, 593
Aor51HI AGCGCT 1 cut(s) 498
ApoI RAATTY 2 cut(s) 365, 617
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 98, 441, 721
AvaI CYCGRG 2 cut(s) 243, 593
AvaII GGWCC 1 cut(s) 650
BauI CACGAG 1 cut(s) 102
BccI CCATC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 533
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 2 cut(s) 24, 53
BfoI RGCGCY 1 cut(s) 500
BlpI GCTNAGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 650
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 2 cut(s) 243, 593
BmgT120I GGNCC 1 cut(s) 650
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 547, 639, 702
Bpu10I CCTNAGC 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 537
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 549, 652
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 312, 444
BseNI ACTGG 2 cut(s) 549, 652
BseRI GAGGAG 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 719
BsiHKCI CYCGRG 2 cut(s) 243, 593
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 3 cut(s) 10, 244, 457
BsoBI CYCGRG 2 cut(s) 243, 593
Bsp143I GATC 2 cut(s) 232, 598
Bsp1720I GCTNAGC 1 cut(s) 298
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 311, 445
BspHI TCATGA 1 cut(s) 732
BspPI GGATC 1 cut(s) 606
BsrI ACTGG 2 cut(s) 549, 652
BssMI GATC 2 cut(s) 232, 598
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 136, 405, 709
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 21, 311, 376, 717
BstDEI CTNAG 3 cut(s) 298, 453, 692
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 235, 601
BstMBI GATC 2 cut(s) 232, 598
BstMWI GCNNNNNNNGC 2 cut(s) 20, 315
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 401
Cac8I GCNNGC 4 cut(s) 21, 311, 376, 717
CciI TCATGA 1 cut(s) 732
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 650
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 3 cut(s) 146, 333, 727
CviAII CATG 1 cut(s) 733
CviQI GTAC 3 cut(s) 146, 333, 727
DdeI CTNAG 3 cut(s) 298, 453, 692
DpnI GATC 2 cut(s) 234, 600
DpnII GATC 2 cut(s) 232, 598
DraIII CACNNNGTG 1 cut(s) 86
DriI GACNNNNNGTC 1 cut(s) 640
Eam1105I GACNNNNNGTC 1 cut(s) 640
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 650
Eco47III AGCGCT 1 cut(s) 498
Eco88I CYCGRG 2 cut(s) 243, 593
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 91
FaeI CATG 1 cut(s) 736
FaiI YATR 4 cut(s) 408, 416, 488, 734
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 732
FblI GTMKAC 2 cut(s) 514, 644
FspBI CTAG 2 cut(s) 24, 53
GlaI GCGC 1 cut(s) 498
GsaI CCCAGC 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 500
HhaI GCGC 1 cut(s) 499
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 17, 477
HinfI GANTC 4 cut(s) 71, 250, 428, 561
HphI GGTGA 3 cut(s) 98, 441, 721
Hpy166II GTNNAC 3 cut(s) 515, 610, 645
Hpy188I TCNGA 3 cut(s) 70, 237, 438
Hpy188III TCNNGA 3 cut(s) 104, 593, 733
Hpy8I GTNNAC 3 cut(s) 515, 610, 645
HpyCH4III ACNGT 3 cut(s) 136, 405, 709
HpyCH4V TGCA 4 cut(s) 14, 80, 111, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 315
HpyF3I CTNAG 3 cut(s) 298, 453, 692
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 1 cut(s) 497
Kzo9I GATC 2 cut(s) 232, 598
LweI GCATC 3 cut(s) 547, 639, 702
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 2 cut(s) 24, 53
MaeIII GTNAC 2 cut(s) 270, 395
MalI GATC 2 cut(s) 234, 600
MboI GATC 2 cut(s) 232, 598
MboII GAAGA 2 cut(s) 85, 88
MflI RGATCY 1 cut(s) 598
MluCI AATT 6 cut(s) 43, 186, 204, 265, 365, 617
MlyI GAGTC 3 cut(s) 80, 244, 437
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 5 cut(s) 42, 212, 239, 589, 740
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 3 cut(s) 185, 257, 739
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 3 cut(s) 10, 244, 457
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 20, 315
NdeII GATC 2 cut(s) 232, 598
NlaIII CATG 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 270, 395
PaeR7I CTCGAG 2 cut(s) 243, 593
PagI TCATGA 1 cut(s) 732
PctI GAATGC 3 cut(s) 10, 244, 457
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 561
PflMI CCANNNNNTGG 1 cut(s) 161
PleI GAGTC 3 cut(s) 79, 244, 436
PpsI GAGTC 3 cut(s) 79, 244, 436
Psp6I CCWGG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 650
PspXI VCTCGAGB 1 cut(s) 243
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 3 cut(s) 147, 334, 728
RsaNI GTAC 3 cut(s) 146, 333, 727
SaqAI TTAA 3 cut(s) 185, 257, 739
Sau3AI GATC 2 cut(s) 232, 598
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 3 cut(s) 80, 244, 437
ScrFI CCNGG 1 cut(s) 84
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 3 cut(s) 547, 639, 702
Sfr274I CTCGAG 2 cut(s) 243, 593
SinI GGWCC 1 cut(s) 650
SlaI CTCGAG 2 cut(s) 243, 593
SmlI CTYRAG 3 cut(s) 243, 593, 625
SmoI CTYRAG 3 cut(s) 243, 593, 625
Sse9I AATT 6 cut(s) 43, 186, 204, 265, 365, 617
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 24, 53
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 136, 405, 709
TaqI TCGA 5 cut(s) 231, 244, 541, 594, 633
TasI AATT 6 cut(s) 43, 186, 204, 265, 365, 617
TfiI GAWTC 1 cut(s) 561
Tru1I TTAA 3 cut(s) 185, 257, 739
Tru9I TTAA 3 cut(s) 185, 257, 739
TscAI CASTG 2 cut(s) 129, 408
TseFI GTSAC 2 cut(s) 270, 395
Tsp45I GTSAC 2 cut(s) 270, 395
TspDTI ATGAA 2 cut(s) 17, 489
TspRI CASTG 2 cut(s) 129, 408
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 2 cut(s) 365, 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XhoI CTCGAG 2 cut(s) 243, 593
XmiI GTMKAC 2 cut(s) 514, 644
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 24, 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.