Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0020681

Physical Location & Seq

Genomic Coordinates Reverse (-)

133016 .. 133525

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggcttcgagctgccattttggaagccagcgatggtctggtttcggttgcatcgctgatgatgggcgtgggagctgtgaaacaagatgtgaaaggcatgctccttcccgggggtgctgggcgcctgggctagtagcagtggcatgcatgcagcatggccctaggggaatttgtctccgtgtacgctcagcacgacacggagatctcccaaatgaagagagagatgatggaacaaaatggcggagacgagaatactgcagaagagcaggcaaagaagaagaagaatatgctgccgagcccggtgaaagcaccatagcattggccattgcattttctataggcgcagtggtgcctttgctgggctctgtgtttatgaaggaccacaaggtaggaacggctgtggtgtctgctttggcaagcgttgcattggctgtgttgggaggagtaggagcagtgttgggtgggacaccagttctgaggtcttgtgcaagggtattcctaggagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

169

Amino Acids

17.83

Weight (kDa)

8.65

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	93 - 169	6.1e-12	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020681)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025383
rosa_multiflora	Rmu_sc0002169.1_g000026 Rmu_sc0002502.1_g000002
rosa_samantha	Rh3BG067000 Rh3CG065400
rosa_wichuraiana	Rw3G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	121, 349
AciI	CCGC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	110, 359
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	12, 75
AluI	AGCT	2 cut(s)	12, 75
Alw26I	GTCTC	2 cut(s)	179, 238
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	157, 321
ApeKI	GCWGC	3 cut(s)	12, 151, 290
ApoI	RAATTY	1 cut(s)	168
AspA2I	CCTAGG	2 cut(s)	161, 499
AspLEI	GCGC	2 cut(s)	124, 344
AspS9I	GGNCC	2 cut(s)	158, 379
AsuC2I	CCSGG	3 cut(s)	109, 110, 300
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	379
AvrII	CCTAGG	2 cut(s)	161, 499
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	2 cut(s)	121, 349
BanII	GRGCYC	2 cut(s)	300, 365
BbvI	GCAGC	2 cut(s)	163, 277
BccI	CCATC	3 cut(s)	27, 56, 221
BceAI	ACGGC	1 cut(s)	411
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	3 cut(s)	109, 110, 300
BcoDI	GTCTC	2 cut(s)	179, 238
BfaI	CTAG	3 cut(s)	131, 162, 500
BfmI	CTRYAG	2 cut(s)	256, 336
BfoI	RGCGCY	1 cut(s)	125
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	13, 152, 291
BlnI	CCTAGG	2 cut(s)	161, 499
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	3 cut(s)	14, 153, 292
Bme1390I	CCNGG	4 cut(s)	109, 110, 126, 300
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	158, 379
BmiI	GGNNCC	2 cut(s)	123, 351
BmrFI	CCNGG	4 cut(s)	109, 110, 126, 300
BmsI	GCATC	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	3 cut(s)	109, 110, 300
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	108, 109, 125, 161, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 359
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	5 cut(s)	108, 109, 125, 161, 499
BseLI	CCNNNNNNNGG	2 cut(s)	110, 359
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	201, 467
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	163, 277
BseYI	CCCAGC	2 cut(s)	117, 358
BshFI	GGCC	2 cut(s)	159, 323
BshNI	GGYRCC	2 cut(s)	121, 349
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	109, 300
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	110, 359
BsmAI	GTCTC	2 cut(s)	179, 238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	159, 323
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	300, 365
Bsp143I	GATC	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	159, 323
BspCNI	CTCAG	2 cut(s)	200, 468
BspLI	GGNNCC	2 cut(s)	123, 351
BspMAI	CTGCAG	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	121, 349
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	5 cut(s)	108, 109, 125, 161, 499
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	161, 499
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	210, 256
BstACI	GRCGYC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	6 cut(s)	29, 99, 145, 149, 268, 418
BstDEI	CTNAG	2 cut(s)	187, 476
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 344
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	179, 238
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	3 cut(s)	101, 147, 151
BstSCI	CCNGG	4 cut(s)	107, 108, 124, 298
BstSFI	CTRYAG	2 cut(s)	256, 336
BstV1I	GCAGC	2 cut(s)	163, 277
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	159, 323
BtgZI	GCGATG	2 cut(s)	37, 46
BtsI	GCAGTG	3 cut(s)	144, 351, 459
BtsIMutI	CAGTG	3 cut(s)	144, 351, 459
Cac8I	GCNNGC	6 cut(s)	29, 99, 145, 149, 268, 418
CfoI	GCGC	2 cut(s)	124, 344
Cfr13I	GGNCC	2 cut(s)	158, 379
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	4 cut(s)	98, 144, 148, 155
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	187, 476
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	210, 256
EarI	CTCTTC	2 cut(s)	210, 256
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	161, 499
Eco24I	GRGCYC	2 cut(s)	300, 365
Eco47I	GGWCC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	161, 499
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	2 cut(s)	300, 365
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	161, 499
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	4 cut(s)	101, 147, 151, 158
FaiI	YATR	8 cut(s)	99, 145, 149, 156, 288, 314, 338, 374
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	97, 143, 147, 154
Fnu4HI	GCNGC	3 cut(s)	13, 152, 291
FriOI	GRGCYC	2 cut(s)	300, 365
Fsp4HI	GCNGC	3 cut(s)	13, 152, 291
FspBI	CTAG	3 cut(s)	131, 162, 500
GlaI	GCGC	2 cut(s)	123, 343
GluI	GCNGC	3 cut(s)	13, 152, 291
GsaI	CCCAGC	2 cut(s)	121, 362
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	159, 323
HapII	CCGG	2 cut(s)	109, 300
HhaI	GCGC	2 cut(s)	124, 344
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	101, 147, 151, 158
Hin6I	GCGC	2 cut(s)	122, 342
HinP1I	GCGC	2 cut(s)	122, 342
HpaII	CCGG	2 cut(s)	109, 300
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	477
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	114, 370
HpyCH4V	TGCA	7 cut(s)	51, 147, 151, 258, 329, 425, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	187, 476
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	101, 147, 151, 158
HspAI	GCGC	2 cut(s)	122, 342
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	72, 106, 449
Lsp1109I	GCAGC	2 cut(s)	163, 277
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	131, 162, 500
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	5 cut(s)	227, 273, 287, 290, 293
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	300, 365
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	323
Mly113I	GGCGCC	1 cut(s)	122
MnlI	CCTC	3 cut(s)	434, 471, 497
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	2 cut(s)	109, 300
MspR9I	CCNGG	4 cut(s)	109, 110, 126, 300
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	422
NarI	GGCGCC	1 cut(s)	122
NciI	CCSGG	3 cut(s)	109, 110, 300
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	101, 147, 151, 158
NlaIV	GGNNCC	2 cut(s)	123, 351
NmeAIII	GCCGAG	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	3 cut(s)	101, 147, 151
PaeI	GCATGC	3 cut(s)	101, 147, 151
PciSI	GCTCTTC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	14, 153, 292
PluTI	GGCGCC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	2 cut(s)	117, 358
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	123, 351
PspPI	GGNCC	2 cut(s)	158, 379
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	256
SatI	GCNGC	3 cut(s)	13, 152, 291
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	2 cut(s)	158, 379
ScrFI	CCNGG	4 cut(s)	109, 110, 126, 300
SduI	GDGCHC	2 cut(s)	300, 365
SetI	ASST	4 cut(s)	14, 77, 390, 482
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	2 cut(s)	256, 336
SfoI	GGCGCC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	379
SmaI	CCCGGG	1 cut(s)	110
SphI	GCATGC	3 cut(s)	101, 147, 151
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	241
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	131, 162, 500
StyD4I	CCNGG	4 cut(s)	107, 108, 124, 298
StyI	CCWWGG	2 cut(s)	161, 499
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	168
TscAI	CASTG	3 cut(s)	144, 351, 459
TseI	GCWGC	3 cut(s)	12, 151, 290
TspDTI	ATGAA	2 cut(s)	228, 389
TspGWI	ACGGA	2 cut(s)	167, 213
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	3 cut(s)	144, 351, 459
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	3 cut(s)	101, 147, 151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	108
XmaJI	CCTAGG	2 cut(s)	161, 499
XspI	CTAG	3 cut(s)	131, 162, 500
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.