Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002226.1

Orthogroup ID

OG0025528

Physical Location & Seq

Genomic Coordinates Reverse (-)

2525 .. 3470

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002226.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgccggcgaatccctcccggagattttccacaattgttcaattccttgggcgattgcggcacatagctcagttccgcaggaggaaaggagctagcaaagccgctcaggccgccgcggctcgccgccagtggaaggtcggcgatcttgtgcttgctaaagtcaaagggttccctgcttggcctgctacggtaagtgagccggagaagtggggttactctgctgattggaagaaagtactcgttttcttctttggaacacaacagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind GSHPx PWWP

Protein Analysis

89

Amino Acids

10.13

Weight (kDa)

11.73

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025528)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002226.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176000
rosa_samantha	Rh2BG253800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	116
AciI	CCGC	7 cut(s)	58, 76, 102, 111, 114, 116, 124
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	2 cut(s)	68, 92
AluI	AGCT	2 cut(s)	68, 92
AoxI	GGCC	2 cut(s)	108, 179
AsuC2I	CCSGG	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BcnI	CCSGG	1 cut(s)	19
BfaI	CTAG	1 cut(s)	93
BglI	GCCNNNNNGGC	2 cut(s)	107, 116
BisI	GCNGC	6 cut(s)	59, 102, 111, 114, 117, 124
BlsI	GCNGC	6 cut(s)	60, 103, 112, 115, 118, 125
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	19
BmtI	GCTAGC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	46, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	46, 114
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	83, 119
BseNI	ACTGG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	110, 181
BsiSI	CCGG	3 cut(s)	5, 19, 200
BslI	CCNNNNNNNGG	1 cut(s)	133
BsnI	GGCC	2 cut(s)	110, 181
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	7 cut(s)	58, 76, 102, 111, 114, 116, 124
BspANI	GGCC	2 cut(s)	110, 181
BspCNI	CTCAG	2 cut(s)	82, 118
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	46, 114
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	5 cut(s)	6, 94, 121, 153, 183
BstDEI	CTNAG	2 cut(s)	69, 105
BstDSI	CCRYGG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 98, 107, 110, 116, 182
BstSCI	CCNGG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	110, 181
BtgI	CCRYGG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	5 cut(s)	6, 94, 121, 153, 183
Cfr10I	RCCGGY	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	7 cut(s)	68, 92, 101, 110, 119, 181, 199
CviKI_1	RGCY	7 cut(s)	68, 92, 101, 110, 119, 181, 199
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	69, 105
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaiI	YATR	1 cut(s)	65
Fnu4HI	GCNGC	6 cut(s)	59, 102, 111, 114, 117, 124
Fsp4HI	GCNGC	6 cut(s)	59, 102, 111, 114, 117, 124
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	6 cut(s)	59, 102, 111, 114, 117, 124
HaeIII	GGCC	2 cut(s)	110, 181
HapII	CCGG	3 cut(s)	5, 19, 200
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	5, 19, 200
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 98, 107, 110, 116, 182
HpyF3I	CTNAG	2 cut(s)	69, 105
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	18, 32, 64, 92, 140, 186, 195, 213
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	238, 241
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	2 cut(s)	33, 41
MnlI	CCTC	2 cut(s)	25, 75
MroNI	GCCGGC	1 cut(s)	4
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	5, 19, 200
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	6 cut(s)	58, 98, 107, 110, 116, 182
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	6 cut(s)	60, 103, 112, 115, 118, 125
PspN4I	GGNNCC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	117
SatI	GCNGC	6 cut(s)	59, 102, 111, 114, 117, 124
Sau3AI	GATC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	3 cut(s)	70, 94, 138
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
Sse9I	AATT	2 cut(s)	33, 41
SsiI	CCGC	7 cut(s)	58, 76, 102, 111, 114, 116, 124
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	2 cut(s)	33, 41
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	6 cut(s)	61, 104, 113, 116, 119, 126
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	134
TspRI	CASTG	1 cut(s)	134
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.