Rmu_sc0002251.1_g000002

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002251.1
OG0023081
Physical Location & Seq
Forward (+)
4521 .. 5373
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002251.1_g000002.1.cds

Sequence Viewer

Length: 387 bp
atgacagagggtggttgttgtccgaatgtgatgaatggcgggatcagggcactagtggaagcgattcactctactcccactcagtccgttctctatctctccggcggagcctctcaggcggtggcgtggttactctccgttcccggagcttcaagtacagtcctggaaactgtagtgccttattcccgaatgtctatgatccaattactaggcaagattccggacaatttttgtagccagcacactgctgaagaaatggctctgttggcttacaatcgcgctctcaagctctcctcaccaggttccccagttcttggtgtgggtttcactggttctttggttacctcacatccaaagctcggggaccacaggtacgtagatacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

128

Amino Acids

13.42

Weight (kDa)

6.38

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023081)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002251.1_g000002
rosa_samantha Rh1DG158200 Rh4AG022200 Rh5DG400400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 3 cut(s) 39, 105, 119
AclWI GGATC 2 cut(s) 50, 193
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 2 cut(s) 157, 374
AfiI CCNNNNNNNGG 2 cut(s) 314, 359
AgsI TTSAA 1 cut(s) 153
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 2 cut(s) 162, 298
AluBI AGCT 3 cut(s) 149, 289, 358
AluI AGCT 3 cut(s) 149, 289, 358
AlwI GGATC 2 cut(s) 50, 193
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 164, 300
BcnI CCSGG 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 53, 209
BfmI CTRYAG 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 116
Bme1390I CCNGG 3 cut(s) 144, 164, 300
Bme18I GGWCC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 3 cut(s) 109, 304, 365
BmrFI CCNGG 3 cut(s) 144, 164, 300
BmrI ACTGGG 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 2 cut(s) 376, 384
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 359
Bse1I ACTGG 2 cut(s) 308, 334
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 2 cut(s) 164, 300
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 314, 359
BseMII CTCAG 2 cut(s) 95, 128
BseNI ACTGG 2 cut(s) 308, 334
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 3 cut(s) 102, 144, 221
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 314, 359
BsmFI GGGAC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 2 cut(s) 42, 198
BspACI CCGC 3 cut(s) 39, 105, 119
BspCNI CTCAG 2 cut(s) 94, 127
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 109, 304, 365
BspPI GGATC 2 cut(s) 50, 193
BsrI ACTGG 2 cut(s) 308, 334
BssMI GATC 2 cut(s) 42, 198
Bst2UI CCWGG 2 cut(s) 164, 300
Bst4CI ACNGT 2 cut(s) 160, 172
BstBAI YACGTR 2 cut(s) 376, 384
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 81, 114
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 45, 201
BstMBI GATC 2 cut(s) 42, 198
BstMWI GCNNNNNNNGC 2 cut(s) 116, 266
BstNI CCWGG 2 cut(s) 164, 300
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 3 cut(s) 142, 162, 298
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 52
BstSNI TACGTA 2 cut(s) 376, 384
BstUI CGCG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 327
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 364
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 2 cut(s) 156, 373
CviJI RGCY 7 cut(s) 110, 149, 237, 260, 269, 289, 358
CviKI_1 RGCY 7 cut(s) 110, 149, 237, 260, 269, 289, 358
CviQI GTAC 2 cut(s) 156, 373
DdeI CTNAG 2 cut(s) 81, 114
DpnI GATC 2 cut(s) 44, 200
DpnII GATC 2 cut(s) 42, 198
EciI GGCGGA 1 cut(s) 120
Eco105I TACGTA 2 cut(s) 376, 384
Eco47I GGWCC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 162, 298
FaiI YATR 1 cut(s) 197
FaqI GGGAC 1 cut(s) 377
FauI CCCGC 1 cut(s) 32
FokI GGATG 1 cut(s) 336
FspBI CTAG 2 cut(s) 53, 209
GlaI GCGC 1 cut(s) 280
HapII CCGG 3 cut(s) 102, 144, 221
HhaI GCGC 1 cut(s) 281
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 2 cut(s) 64, 217
HpaII CCGG 3 cut(s) 102, 144, 221
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 186, 221
HpyCH4III ACNGT 2 cut(s) 160, 172
HpyCH4IV ACGT 2 cut(s) 375, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 266
HpyF3I CTNAG 2 cut(s) 81, 114
HpySE526I ACGT 2 cut(s) 375, 383
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 42, 198
LmnI GCTCC 2 cut(s) 107, 146
MabI ACCWGGT 1 cut(s) 298
MaeI CTAG 2 cut(s) 53, 209
MaeII ACGT 2 cut(s) 375, 383
MaeIII GTNAC 2 cut(s) 129, 340
MalI GATC 2 cut(s) 44, 200
MboI GATC 2 cut(s) 42, 198
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 203, 226
MnlI CCTC 3 cut(s) 121, 304, 355
MroI TCCGGA 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 63
MspI CCGG 3 cut(s) 102, 144, 221
MspR9I CCNGG 3 cut(s) 144, 164, 300
MvaI CCWGG 2 cut(s) 164, 300
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 116, 266
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 42, 198
NlaIV GGNNCC 3 cut(s) 109, 304, 365
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 64, 217
PflMI CCANNNNNTGG 1 cut(s) 314
PfoI TCCNGGA 2 cut(s) 142, 162
Ppu21I YACGTR 2 cut(s) 376, 384
Psp6I CCWGG 2 cut(s) 162, 298
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 162, 298
PspN4I GGNNCC 3 cut(s) 109, 304, 365
PspPI GGNCC 1 cut(s) 364
RsaI GTAC 2 cut(s) 157, 374
RsaNI GTAC 2 cut(s) 156, 373
Sau3AI GATC 2 cut(s) 42, 198
Sau96I GGNCC 1 cut(s) 364
ScrFI CCNGG 3 cut(s) 144, 164, 300
SduI GDGCHC 1 cut(s) 52
SetI ASST 8 cut(s) 151, 291, 304, 347, 360, 374, 378, 386
SexAI ACCWGGT 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SnaBI TACGTA 2 cut(s) 376, 384
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 2 cut(s) 203, 226
SsiI CCGC 3 cut(s) 39, 105, 119
SspMI CTAG 2 cut(s) 53, 209
StyD4I CCNGG 3 cut(s) 142, 162, 298
TaaI ACNGT 2 cut(s) 160, 172
TaiI ACGT 2 cut(s) 378, 386
TasI AATT 2 cut(s) 203, 226
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 2 cut(s) 64, 217
TscAI CASTG 2 cut(s) 250, 334
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 2 cut(s) 76, 127
TspRI CASTG 2 cut(s) 250, 334
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 53, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.