Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0023081

Physical Location & Seq

Genomic Coordinates Forward (+)

4244853 .. 4246565

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCGTGGTTACTCTCCATTCCCGGAGCCGCAAGTACAGACTTGGAAATTGTAGTGCCTTCTCATTGTAAGTTTGATTGCTCAAGTGATGTCACCCTTATGAAGGAGCAATACTTCATTATGAAGCCAAAAGAAACGTTAACTCAATCATTCAAACTTTACCCAGGACCCGATCAAGCTGCAAAATACATCTGTGCAGGTATGATCTGCCCAAACCATAGTGATGATAAAATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

5.47

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023081)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002251.1_g000002
rosa_samantha	Rh1DG158200 Rh4AG022200 Rh5DG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AciI	CCGC	1 cut(s)	30
AclI	AACGTT	1 cut(s)	137
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbvI	GCAGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	30, 180
BlsI	GCNGC	2 cut(s)	31, 181
Bme1390I	CCNGG	2 cut(s)	24, 165
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	28, 169
BmrFI	CCNGG	2 cut(s)	24, 165
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	172, 204
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	28, 169
BspMI	ACCTGC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	172, 204
Bst2UI	CCWGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	175, 207
BstMBI	GATC	2 cut(s)	172, 204
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	22, 163
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	4 cut(s)	29, 127, 179, 236
CviKI_1	RGCY	4 cut(s)	29, 127, 179, 236
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	2 cut(s)	174, 206
DpnII	GATC	2 cut(s)	172, 204
Eco47I	GGWCC	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	163
FaiI	YATR	4 cut(s)	101, 122, 203, 219
Fnu4HI	GCNGC	2 cut(s)	30, 180
Fsp4HI	GCNGC	2 cut(s)	30, 180
GluI	GCNGC	2 cut(s)	30, 180
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HpaI	GTTAAC	1 cut(s)	141
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	69, 97
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	182, 197
HpySE526I	ACGT	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	172, 204
LmnI	GCTCC	2 cut(s)	26, 106
LpnPI	CCDG	4 cut(s)	37, 150, 177, 183
Lsp1109I	GCAGC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	9, 91
MalI	GATC	2 cut(s)	174, 206
MboI	GATC	2 cut(s)	172, 204
MluCI	AATT	1 cut(s)	48
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	98, 222
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	24, 165
MvaI	CCWGG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	172, 204
NlaIV	GGNNCC	2 cut(s)	28, 169
NmuCI	GTSAC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	31, 181
PpuMI	RGGWCCY	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	28, 169
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	2 cut(s)	98, 222
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	30, 180
Sau3AI	GATC	2 cut(s)	172, 204
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	24, 165
SetI	ASST	3 cut(s)	140, 181, 202
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	98, 222
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	22, 163
TaiI	ACGT	1 cut(s)	140
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	106, 116, 137
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.