Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0023081

Physical Location & Seq

Genomic Coordinates Reverse (-)

63394197 .. 63398088

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG400400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGACAGAGGCTACTTGTTGTATGAATGTGATGAATAGCGGAATCAGAGCACTAGTGAAAGCCATTCACTCTACTCCCACACAGTCTGTTCTCTATTTCTCCAGCGGAGCCTCTCAGGAGCAATACTTCATTATGAAGCCAAAAGAAACGTTAACTCGATCATTCAAACTTTACCTAGGAACCGATCAAGCTGCAAAATACATCTGTGCAGGTATGATCTGCCCAAGCCATAGTGATGATAAAATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

83

Amino Acids

9.15

Weight (kDa)

8.4

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023081)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002251.1_g000002
rosa_samantha	Rh1DG158200 Rh4AG022200 Rh5DG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AciI	CCGC	2 cut(s)	39, 105
AclI	AACGTT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	166
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	191
AspA2I	CCTAGG	1 cut(s)	175
AvrII	CCTAGG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	2 cut(s)	53, 176
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	192
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	109, 181
BpmI	CTGGAG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	158, 184, 216
BspACI	CCGC	2 cut(s)	39, 105
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	109, 181
BspMI	ACCTGC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	158, 184, 216
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	161, 187, 219
BstMBI	GATC	3 cut(s)	158, 184, 216
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	200
CviJI	RGCY	7 cut(s)	11, 62, 110, 139, 191, 228, 248
CviKI_1	RGCY	7 cut(s)	11, 62, 110, 139, 191, 228, 248
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	160, 186, 218
DpnII	GATC	3 cut(s)	158, 184, 216
Eco130I	CCWWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaiI	YATR	4 cut(s)	23, 134, 215, 231
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	53, 176
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	42
HpaI	GTTAAC	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	194, 209
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	149
KspAI	GTTAAC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	158, 184, 216
LmnI	GCTCC	2 cut(s)	107, 118
LpnPI	CCDG	3 cut(s)	101, 115, 195
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	53, 176
MaeII	ACGT	1 cut(s)	149
MalI	GATC	3 cut(s)	160, 186, 218
MboI	GATC	3 cut(s)	158, 184, 216
MhlI	GDGCHC	1 cut(s)	52
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	105
NdeII	GATC	3 cut(s)	158, 184, 216
NlaIV	GGNNCC	2 cut(s)	109, 181
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	193
Psp1406I	AACGTT	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	109, 181
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	158, 184, 216
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	4 cut(s)	152, 177, 193, 214
SgeI	CNNG	9 cut(s)	27, 65, 114, 128, 168, 188, 200, 222, 237
SmiMI	CAYNNNNRTG	1 cut(s)	234
SpeI	ACTAGT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	39, 105
SspMI	CTAG	2 cut(s)	53, 176
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	38, 47, 118, 149
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	53, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.