Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002380.1

Orthogroup ID

OG0016300

Physical Location & Seq

Genomic Coordinates Reverse (-)

107157 .. 108335

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002380.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgcctaatactagtgtagacgctttctgtgtcgccaaatatgggccaaagtgggtgaggacaagaacagttgttgataattgttctccaaagtggaatgaacaatatatgtgggaagtctatgatcattgtacagtcataactattgcagttttccaaaataagtacttgctcaattgggaaagaaaccgtgatcgggaaattggaaaagtaaggattcggctatccaatcttgaatttgacaaagtttacacaaattcccatccccttgtgagtctagaaccttatggggtgatgaagagaggtgaacttcaattgtcttatcgattttgttctacatctaagttgaatgtgtaccatagttatacacaagccctttggcccaaactgcattatgttcttccactatcagtagctcagattcacagactaaggcctcaagctgttaagcttacagaatcaaggttgcagaaggctgagtcaccactaagcccagaggttgtgcagtatgtgttggatgataataagcataagtttagtctccgaagagctaaagctaattttttgaggtgtatgaaacttttagagtgtttctcactttacagacagcggtttgatcggctgcggaaatggactaatccattgcataatgctgtctttataatttccctcattgaggtcacttggttcccttggatggcactggcttctatgtttttcatgctttctggtataggggcttggggttactggaagaggcctaaacaacttcctcatatagacactgaattgtctcaggtttatagtgtccaccctgatgagattgctgaagagtttgattcatttccaacaagtgcaactgggaacattttgacgatcagatatcatcgactccaaggcattatattgaatgttcagacaacgcttggtgacattgcaactacaggggagagggtgcagtctttgttgagttggagggataaaaaagctacacttctcgctctgatcttctttttctctgctgggatggtgttttacatttacccttttagcgtgcgaagtcttgttttctggactatattgtatatgaccaggcatccaatgcttcgtattgaccttccttcatatttccacaacttcattaggaggatgccatcaaagatagacagcatgctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

392

Amino Acids

46.25

Weight (kDa)

9.63

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016300)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44340
rosa_chinensis	RchiOBHm_Chr5g0080721
rosa_laevigata	RLG00000036888
rosa_multiflora	Rmu_sc0002380.1_g000014 Rmu_sc0003177.1_g000005 Rmu_sc0027070.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002710
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525000 Rh5BG547100 Rh5CG570500 Rh5CG571000 Rh5DG557300
rosa_wichuraiana	Rw5G048680 Rw5G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	610, 625
AcsI	RAATTY	2 cut(s)	236, 256
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	3 cut(s)	133, 167, 356
AfiI	CCNNNNNNNGG	4 cut(s)	42, 196, 676, 697
AgsI	TTSAA	4 cut(s)	236, 314, 349, 910
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	1091
AluBI	AGCT	6 cut(s)	416, 443, 451, 551, 557, 989
AluI	AGCT	6 cut(s)	416, 443, 451, 551, 557, 989
Alw26I	GTCTC	2 cut(s)	545, 798
AoxI	GGCC	4 cut(s)	44, 380, 434, 758
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	2 cut(s)	236, 256
AspS9I	GGNCC	2 cut(s)	44, 381
AsuHPI	GGTGA	5 cut(s)	67, 304, 317, 474, 941
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	4 cut(s)	270, 691, 1021, 1162
BciT130I	CCWGG	1 cut(s)	1093
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	545, 798
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 278
BfmI	CTRYAG	1 cut(s)	942
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	1093
BmgT120I	GGNCC	2 cut(s)	44, 381
BmiI	GGNNCC	1 cut(s)	689
BmrFI	CCNGG	1 cut(s)	1093
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	2 cut(s)	1105, 1140
BmuI	ACTGGG	1 cut(s)	870
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpuEI	CTTGAG	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	692, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 196, 676, 697
Bse1I	ACTGG	3 cut(s)	708, 755, 865
Bse3DI	GCAATG	2 cut(s)	641, 933
BseBI	CCWGG	1 cut(s)	1093
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	692, 895
BseGI	GGATG	6 cut(s)	262, 523, 702, 1032, 1096, 1155
BseLI	CCNNNNNNNGG	4 cut(s)	42, 196, 676, 697
BseMI	GCAATG	2 cut(s)	641, 933
BseMII	CTCAG	3 cut(s)	431, 468, 809
BseNI	ACTGG	3 cut(s)	708, 755, 865
BseXI	GCAGC	1 cut(s)	609
BseYI	CCCAGC	1 cut(s)	1022
BsgI	GTGCAG	2 cut(s)	524, 977
BshFI	GGCC	4 cut(s)	46, 382, 436, 760
BshVI	ATCGAT	1 cut(s)	325
BslI	CCNNNNNNNGG	4 cut(s)	42, 196, 676, 697
BsmAI	GTCTC	2 cut(s)	545, 798
BsnI	GGCC	4 cut(s)	46, 382, 436, 760
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	124, 193, 616, 876, 1005
BspACI	CCGC	2 cut(s)	610, 625
BspANI	GGCC	4 cut(s)	46, 382, 436, 760
BspCNI	CTCAG	3 cut(s)	430, 469, 808
BspDI	ATCGAT	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	641, 933
BsrGI	TGTACA	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	708, 755, 865
BssECI	CCNNGG	2 cut(s)	692, 895
BssMI	GATC	5 cut(s)	124, 193, 616, 876, 1005
BssT1I	CCWWGG	2 cut(s)	692, 895
Bst2UI	CCWGG	1 cut(s)	1093
Bst4CI	ACNGT	3 cut(s)	70, 136, 191
Bst6I	CTCTTC	4 cut(s)	293, 541, 749, 825
BstAPI	GCANNNNNTGC	1 cut(s)	1102
BstAUI	TGTACA	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	1055, 1172
BstDEI	CTNAG	6 cut(s)	342, 417, 431, 477, 488, 795
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	6 cut(s)	262, 523, 702, 1032, 1096, 1155
BstKTI	GATC	5 cut(s)	127, 196, 619, 879, 1008
BstMAI	GTCTC	2 cut(s)	545, 798
BstMBI	GATC	5 cut(s)	124, 193, 616, 876, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 1102
BstNI	CCWGG	1 cut(s)	1093
BstNSI	RCATGY	1 cut(s)	1174
BstSCI	CCNGG	1 cut(s)	1091
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	1 cut(s)	609
Bsu15I	ATCGAT	1 cut(s)	325
BsuRI	GGCC	4 cut(s)	46, 382, 436, 760
BsuTUI	ATCGAT	1 cut(s)	325
BtsCI	GGATG	6 cut(s)	262, 523, 702, 1032, 1096, 1155
BtsIMutI	CAGTG	2 cut(s)	701, 783
Cac8I	GCNNGC	2 cut(s)	1055, 1172
Cfr13I	GGNCC	2 cut(s)	44, 381
ClaI	ATCGAT	1 cut(s)	325
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	132, 166, 355
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviAII	CATG	2 cut(s)	721, 1171
CviQI	GTAC	3 cut(s)	132, 166, 355
DdeI	CTNAG	6 cut(s)	342, 417, 431, 477, 488, 795
DpnI	GATC	5 cut(s)	126, 195, 618, 878, 1007
DpnII	GATC	5 cut(s)	124, 193, 616, 876, 1005
Eam1104I	CTCTTC	4 cut(s)	293, 541, 749, 825
EarI	CTCTTC	4 cut(s)	293, 541, 749, 825
Eco130I	CCWWGG	2 cut(s)	692, 895
Eco147I	AGGCCT	2 cut(s)	436, 760
Eco32I	GATATC	1 cut(s)	884
Eco57I	CTGAAG	1 cut(s)	849
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	1091
EcoRV	GATATC	1 cut(s)	884
EcoT14I	CCWWGG	2 cut(s)	692, 895
ErhI	CCWWGG	2 cut(s)	692, 895
FaeI	CATG	2 cut(s)	724, 1174
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FatI	CATG	2 cut(s)	720, 1170
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	623
FokI	GGATG	6 cut(s)	249, 530, 709, 1039, 1083, 1162
Fsp4HI	GCNGC	1 cut(s)	623
FspBI	CTAG	2 cut(s)	12, 278
GluI	GCNGC	1 cut(s)	623
GsaI	CCCAGC	1 cut(s)	1026
HaeIII	GGCC	4 cut(s)	46, 382, 436, 760
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	724, 1174
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	7 cut(s)	217, 274, 421, 458, 479, 839, 891
HphI	GGTGA	5 cut(s)	67, 304, 317, 474, 941
Hpy166II	GTNNAC	5 cut(s)	19, 250, 308, 355, 811
Hpy188I	TCNGA	5 cut(s)	420, 545, 881, 918, 1005
Hpy188III	TCNNGA	4 cut(s)	197, 233, 278, 1072
Hpy8I	GTNNAC	5 cut(s)	19, 250, 308, 355, 811
HpyAV	CCTTC	3 cut(s)	466, 1127, 1131
HpyCH4III	ACNGT	3 cut(s)	70, 136, 191
HpyCH4V	TGCA	8 cut(s)	149, 391, 469, 505, 646, 857, 938, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 1102
HpyF3I	CTNAG	6 cut(s)	342, 417, 431, 477, 488, 795
Hsp92II	CATG	2 cut(s)	724, 1174
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 193, 616, 876, 1005
LguI	GCTCTTC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	1105, 1140
MaeI	CTAG	2 cut(s)	12, 278
MaeIII	GTNAC	4 cut(s)	480, 679, 746, 929
MalI	GATC	5 cut(s)	126, 195, 618, 878, 1007
MboI	GATC	5 cut(s)	124, 193, 616, 876, 1005
MboII	GAAGA	6 cut(s)	310, 392, 558, 766, 842, 1000
MfeI	CAATTG	2 cut(s)	175, 314
MluCI	AATT	9 cut(s)	79, 175, 201, 236, 256, 314, 559, 663, 788
MlyI	GAGTC	3 cut(s)	283, 488, 885
MmeI	TCCRAC	3 cut(s)	495, 872, 953
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	1093
MunI	CAATTG	2 cut(s)	175, 314
MvaI	CCWGG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	2 cut(s)	388, 1102
NdeII	GATC	5 cut(s)	124, 193, 616, 876, 1005
NlaIII	CATG	2 cut(s)	724, 1174
NlaIV	GGNNCC	1 cut(s)	689
NmuCI	GTSAC	3 cut(s)	480, 679, 929
NspI	RCATGY	1 cut(s)	1174
PaeI	GCATGC	1 cut(s)	1174
PceI	AGGCCT	2 cut(s)	436, 760
PciSI	GCTCTTC	1 cut(s)	541
PfeI	GAWTC	4 cut(s)	217, 421, 458, 839
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	3 cut(s)	282, 487, 885
PpsI	GAGTC	3 cut(s)	282, 487, 885
PsiI	TTATAA	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	1091
PspFI	CCCAGC	1 cut(s)	1022
PspGI	CCWGG	1 cut(s)	1091
PspN4I	GGNNCC	1 cut(s)	689
PspPI	GGNCC	2 cut(s)	44, 381
RsaI	GTAC	3 cut(s)	133, 167, 356
RsaNI	GTAC	3 cut(s)	132, 166, 355
RseI	CAYNNNNRTG	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	5 cut(s)	124, 193, 616, 876, 1005
Sau96I	GGNCC	2 cut(s)	44, 381
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	3 cut(s)	283, 488, 885
ScrFI	CCNGG	1 cut(s)	1093
SfaNI	GCATC	2 cut(s)	1105, 1140
SfcI	CTRYAG	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SpeI	ACTAGT	1 cut(s)	11
SphI	GCATGC	1 cut(s)	1174
Sse9I	AATT	9 cut(s)	79, 175, 201, 236, 256, 314, 559, 663, 788
SseBI	AGGCCT	2 cut(s)	436, 760
SsiI	CCGC	2 cut(s)	610, 625
SspMI	CTAG	2 cut(s)	12, 278
StuI	AGGCCT	2 cut(s)	436, 760
StyD4I	CCNGG	1 cut(s)	1091
StyI	CCWWGG	2 cut(s)	692, 895
TaaI	ACNGT	3 cut(s)	70, 136, 191
TaqI	TCGA	2 cut(s)	325, 889
TasI	AATT	9 cut(s)	79, 175, 201, 236, 256, 314, 559, 663, 788
TatI	WGTACW	2 cut(s)	131, 165
TfiI	GAWTC	4 cut(s)	217, 421, 458, 839
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	708, 790
TseFI	GTSAC	3 cut(s)	480, 679, 929
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	3 cut(s)	480, 679, 929
TspDTI	ATGAA	7 cut(s)	114, 311, 590, 709, 831, 1113, 1129
TspRI	CASTG	2 cut(s)	708, 790
XagI	CCTNNNNNAGG	1 cut(s)	674
XapI	RAATTY	2 cut(s)	236, 256
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	1174
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	12, 278
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.