Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0016300

Physical Location & Seq

Genomic Coordinates Reverse (-)

18425 .. 19420

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgtcacctcagtggtatgcactggtggaccaaaaagggaatgctaaaggagagttgatgatggcattttggactgggacacaggctgatgaggtctataatagtgctgcgcattctgatgcagcagtagatctaagagatgagggtttattgagtattcgtccaagcgtgtattatacaccaaggttatggtacctcagagttaatgtaattgaagctcaggatctggtgcttaatgtcatcaacaacagagaacagccggcacagatttatgtaaaagctcgtgttccgctttgtgaattgagcactagagcttgtttaaccaagaccgcggatcctaagtggaatgaggacttgatgtttgtggttgcggaagcatttggtgaaactttggatgagggagtctttgagctaaagaaagatgcatcacttccttctgaggagcaaaagaaatatgggaaatatgaggtacttttagggcgttgtaggattcctttgaagaatgtggggaagaggaatgatagatcaccagctgctagtccgtggtatgatcttaaggtaatggagggtgaggcgatgaatgcgagatttgctagtaagattaatatgaggatcagtttggatggcggatatcatgttctcgatgagcctactgagttttctagtgatcttaggccgtcggcaaagatattgtggaagccagcagttgggatgtttgaactgggaatcatgagcgcctctggattgtccccaatgatgcctaagactagtgtggacgctttctgtgtcgccaaatatgggccaaagtgggtgaggacaagaacagttgttgataattgttctccaaagtggaatgaacaatatatgtgggaagtctatgatcgttgtacagtcataacttttgcagttttccaaaataagtacttgctcaattgggaaagaaaccgtgatcgggaaattggaaaagtaatatgcgattcagaaacctttaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

331

Amino Acids

37.78

Weight (kDa)

5.93

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016300)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44340
rosa_chinensis	RchiOBHm_Chr5g0080721
rosa_laevigata	RLG00000036888
rosa_multiflora	Rmu_sc0002380.1_g000014 Rmu_sc0003177.1_g000005 Rmu_sc0027070.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002710
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525000 Rh5BG547100 Rh5CG570500 Rh5CG571000 Rh5DG557300
rosa_wichuraiana	Rw5G048680 Rw5G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccII	CGCG	1 cut(s)	332
AciI	CCGC	5 cut(s)	290, 330, 332, 371, 627
AclWI	GGATC	4 cut(s)	231, 329, 342, 620
AfaI	GTAC	4 cut(s)	194, 471, 889, 923
AfiI	CCNNNNNNNGG	3 cut(s)	707, 798, 952
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	215, 499, 719
AhlI	ACTAGT	1 cut(s)	767
AleI	CACNNNNGTG	1 cut(s)	10
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	5 cut(s)	218, 281, 314, 412, 533
AluI	AGCT	5 cut(s)	218, 281, 314, 412, 533
Alw21I	GWGCWC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	231, 329, 342, 620
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	2 cut(s)	674, 800
ApeKI	GCWGC	3 cut(s)	107, 122, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AseI	ATTAAT	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	112, 737
AspS9I	GGNCC	2 cut(s)	28, 800
AsuHPI	GGTGA	4 cut(s)	395, 519, 581, 823
AvaII	GGWCC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	94, 134, 520
BccI	CCATC	2 cut(s)	55, 617
BceAI	ACGGC	1 cut(s)	661
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	5 cut(s)	309, 537, 594, 663, 768
BfoI	RGCGCY	1 cut(s)	738
BfrI	CTTAAG	1 cut(s)	554
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	3 cut(s)	108, 123, 534
BlsI	GCNGC	3 cut(s)	109, 124, 535
BmcAI	AGTACT	1 cut(s)	923
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	28, 800
BmiI	GGNNCC	2 cut(s)	194, 336
BmrI	ACTGGG	2 cut(s)	84, 731
BmsI	GCATC	4 cut(s)	109, 412, 434, 747
BmuI	ACTGGG	2 cut(s)	84, 731
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	182, 330, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	707, 798, 952
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	27, 79, 726
BseDI	CCNNGG	3 cut(s)	182, 330, 542
BseGI	GGATG	3 cut(s)	400, 628, 717
BseLI	CCNNNNNNNGG	3 cut(s)	707, 798, 952
BseMII	CTCAG	5 cut(s)	23, 211, 233, 429, 645
BseNI	ACTGG	3 cut(s)	27, 79, 726
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	94, 134, 520
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	676, 802
BshNI	GGYRCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	91, 733
BslI	CCNNNNNNNGG	3 cut(s)	707, 798, 952
BsmFI	GGGAC	2 cut(s)	91, 733
BsmI	GAATGC	3 cut(s)	46, 112, 586
BsnI	GGCC	2 cut(s)	676, 802
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp1407I	TGTACA	1 cut(s)	887
Bsp143I	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
BspACI	CCGC	5 cut(s)	290, 330, 332, 371, 627
BspANI	GGCC	2 cut(s)	676, 802
BspCNI	CTCAG	5 cut(s)	22, 210, 232, 430, 646
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	2 cut(s)	194, 336
BspPI	GGATC	4 cut(s)	231, 329, 342, 620
BspT107I	GGYRCC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	887
BsrI	ACTGG	3 cut(s)	27, 79, 726
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	182, 330, 542
BssMI	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	826, 892, 947
Bst6I	CTCTTC	1 cut(s)	506
BstAFI	CTTAAG	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	887
BstC8I	GCNNGC	2 cut(s)	261, 702
BstDEI	CTNAG	9 cut(s)	9, 134, 197, 219, 339, 438, 654, 671, 762
BstDSI	CCRYGG	2 cut(s)	330, 542
BstF5I	GGATG	3 cut(s)	400, 628, 717
BstFNI	CGCG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	2 cut(s)	112, 737
BstKTI	GATC	9 cut(s)	133, 226, 337, 527, 553, 615, 670, 883, 952
BstMBI	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 590
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	94, 134, 520
BstX2I	RGATCY	3 cut(s)	130, 223, 334
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	3 cut(s)	130, 223, 334
BsuRI	GGCC	2 cut(s)	676, 802
BtgI	CCRYGG	2 cut(s)	330, 542
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	400, 628, 717
BtsIMutI	CAGTG	2 cut(s)	17, 20
Cac8I	GCNNGC	2 cut(s)	261, 702
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	2 cut(s)	112, 737
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	28, 800
Cfr42I	CCGCGG	1 cut(s)	333
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	193, 470, 888, 922
CspCI	CAANNNNNGTGG	2 cut(s)	848, 883
CviAII	CATG	2 cut(s)	635, 730
CviQI	GTAC	4 cut(s)	193, 470, 888, 922
DdeI	CTNAG	9 cut(s)	9, 134, 197, 219, 339, 438, 654, 671, 762
DpnI	GATC	9 cut(s)	132, 225, 336, 526, 552, 614, 669, 882, 951
DpnII	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	638, 733
FaqI	GGGAC	2 cut(s)	91, 733
FatI	CATG	2 cut(s)	634, 729
Fnu4HI	GCNGC	3 cut(s)	108, 123, 534
FokI	GGATG	3 cut(s)	407, 635, 724
Fsp4HI	GCNGC	3 cut(s)	108, 123, 534
FspBI	CTAG	5 cut(s)	309, 537, 594, 663, 768
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	2 cut(s)	111, 736
GluI	GCNGC	3 cut(s)	108, 123, 534
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	676, 802
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	2 cut(s)	112, 737
Hin1II	CATG	2 cut(s)	638, 733
Hin6I	GCGC	2 cut(s)	110, 735
HinP1I	GCGC	2 cut(s)	110, 735
HinfI	GANTC	4 cut(s)	402, 490, 726, 977
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	4 cut(s)	395, 519, 581, 823
Hpy166II	GTNNAC	2 cut(s)	28, 775
Hpy188I	TCNGA	4 cut(s)	118, 200, 439, 982
Hpy188III	TCNNGA	5 cut(s)	221, 641, 730, 741, 953
Hpy8I	GTNNAC	2 cut(s)	28, 775
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	3 cut(s)	826, 892, 947
HpyCH4V	TGCA	4 cut(s)	20, 122, 425, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 590
HpyF3I	CTNAG	9 cut(s)	9, 134, 197, 219, 339, 438, 654, 671, 762
Hsp92II	CATG	2 cut(s)	638, 733
HspAI	GCGC	2 cut(s)	110, 735
KpnI	GGTACC	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
KspI	CCGCGG	1 cut(s)	333
Kzo9I	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	3 cut(s)	94, 134, 520
LweI	GCATC	4 cut(s)	109, 412, 434, 747
MaeI	CTAG	5 cut(s)	309, 537, 594, 663, 768
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	9 cut(s)	132, 225, 336, 526, 552, 614, 669, 882, 951
MboI	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
MboII	GAAGA	2 cut(s)	511, 523
MfeI	CAATTG	1 cut(s)	931
MflI	RGATCY	3 cut(s)	130, 223, 334
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	6 cut(s)	210, 299, 835, 931, 957, 991
MlyI	GAGTC	1 cut(s)	411
Mph1103I	ATGCAT	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	6 cut(s)	204, 234, 320, 555, 603, 990
MslI	CAYNNNNRTG	2 cut(s)	10, 117
MspA1I	CMGCKG	2 cut(s)	332, 533
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	931
Mva1269I	GAATGC	3 cut(s)	46, 112, 586
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	581, 590
NaeI	GCCGGC	1 cut(s)	261
NdeII	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	638, 733
NlaIV	GGNNCC	2 cut(s)	194, 336
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	10
PagI	TCATGA	1 cut(s)	729
PctI	GAATGC	3 cut(s)	46, 112, 586
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	490, 726, 977
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	109, 124, 535
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	194, 336
PspPI	GGNCC	2 cut(s)	28, 800
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	130, 223, 334
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	4 cut(s)	194, 471, 889, 923
RsaNI	GTAC	4 cut(s)	193, 470, 888, 922
RseI	CAYNNNNRTG	2 cut(s)	10, 117
SacII	CCGCGG	1 cut(s)	333
SaqAI	TTAA	6 cut(s)	204, 234, 320, 555, 603, 990
SatI	GCNGC	3 cut(s)	108, 123, 534
Sau3AI	GATC	9 cut(s)	130, 223, 334, 524, 550, 612, 667, 880, 949
Sau96I	GGNCC	2 cut(s)	28, 800
ScaI	AGTACT	1 cut(s)	923
SchI	GAGTC	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	4 cut(s)	109, 412, 434, 747
Sfr303I	CCGCGG	1 cut(s)	333
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	10, 117
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	767
Sse9I	AATT	6 cut(s)	210, 299, 835, 931, 957, 991
SsiI	CCGC	5 cut(s)	290, 330, 332, 371, 627
SspMI	CTAG	5 cut(s)	309, 537, 594, 663, 768
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	826, 892, 947
TaqI	TCGA	1 cut(s)	642
TasI	AATT	6 cut(s)	210, 299, 835, 931, 957, 991
TatI	WGTACW	2 cut(s)	887, 921
TfiI	GAWTC	3 cut(s)	490, 726, 977
Tru1I	TTAA	6 cut(s)	204, 234, 320, 555, 603, 990
Tru9I	TTAA	6 cut(s)	204, 234, 320, 555, 603, 990
TscAI	CASTG	2 cut(s)	17, 27
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	107, 122, 533
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	593, 870
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	17, 27
Van91I	CCANNNNNTGG	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	28
VspI	ATTAAT	1 cut(s)	603
XspI	CTAG	5 cut(s)	309, 537, 594, 663, 768
ZrmI	AGTACT	1 cut(s)	923
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.