Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016300

Physical Location & Seq

Genomic Coordinates Reverse (-)

80652912 .. 80654207

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG571000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTAATCAAAAGAAAAAAGATTTTTCTGTTAAGGAGACCAAACCCTCCATCCGTGCCGAGAAGCCGCTGAACGGTCCCACCACCTCCTTTGATCTTGTGGAGGAGATGCTGTATCTATATGTTCGGATTGAGAAAGCCAGACTACTCGTGCTTGATCACAGTCTCCTCCAAGTTGAACTGAAGATTGGGAACTACAGAGGAGCAGCAACAACTGAGGGGAATCCACTGGGAGTTAATGTAATTGAAGCTCAGGATCTGGTGCTTAATGTCATCAACAACAGAGAACAGCCGGCACAGAATTATGTAAAAGCTCGTGTTCCGCTTTGTGAATTGAGCACTAGAGATTGTTTAACCAAGACCACGGATCCTAAGTGGAATGAGGACTTGATGTTTGTGGTTGCGGAACCATTTGGTGAAACTTTGGATGTGGGAGTCGTACTTTTAGGGAGTTGTAGGATTCCTTTGAAGAATGTGGGGAAGAGGAATGATAGATCACCGGCTGCTAGTCCGTGGTATGATCTTAAGGTAATGGAGGGTGAGGGGATGAATGCGAAATTCGCTAGTAAGATTAATATGAGGATCAGTTTGGATGGCGGATATCATGTTTTCGATGAGCCTACTGAGTTTTCTAGTGATCTTAGGCCGTCGGCAAAGATATTGTGGAAGCCAGCAGTTGGGATGTTTGAACTGGGAATTATGAGCGCCTCTGGATTGTCCCCAATAATGCCTAAGACTAGTGTAGACGCTTTCTGTGTCGCCAAATATGGGCCAAAGTGGGTGAGGACAAGAACAGTTGTTGATAATTGTTCTCCAAAGTGGAATGAACAATATATGTGGGAAGTCTATGATCATTGTACAGTCATAACTATTGCAATTTTCCAAAATAAGTACTTGCTCAATTGGGAAATAAACCGTGATCGGGAAATTGGAAAAGTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

314

Amino Acids

35.5

Weight (kDa)

7.55

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	77 - 158	7.1e-08	C2 domain
C2	PF00168	229 - 313	3.6e-12	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016300)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44340
rosa_chinensis	RchiOBHm_Chr5g0080721
rosa_laevigata	RLG00000036888
rosa_multiflora	Rmu_sc0002380.1_g000014 Rmu_sc0003177.1_g000005 Rmu_sc0027070.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002710
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525000 Rh5BG547100 Rh5CG570500 Rh5CG571000 Rh5DG557300
rosa_wichuraiana	Rw5G048680 Rw5G049250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	4 cut(s)	68, 323, 404, 597
AclWI	GGATC	4 cut(s)	264, 362, 375, 590
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	3 cut(s)	441, 859, 893
AfiI	CCNNNNNNNGG	4 cut(s)	74, 677, 768, 922
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	4 cut(s)	179, 248, 469, 689
AhlI	ACTAGT	1 cut(s)	737
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	2 cut(s)	251, 314
AluI	AGCT	2 cut(s)	251, 314
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	32, 170
AlwI	GGATC	4 cut(s)	264, 362, 375, 590
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	644, 770
ApeKI	GCWGC	2 cut(s)	206, 503
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	707
AspS9I	GGNCC	2 cut(s)	77, 770
AsuHPI	GGTGA	4 cut(s)	428, 489, 551, 793
AvaII	GGWCC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	367
BauI	CACGAG	2 cut(s)	149, 315
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	218, 490
BccI	CCATC	2 cut(s)	59, 587
BceAI	ACGGC	1 cut(s)	631
BclI	TGATCA	2 cut(s)	157, 850
BcoDI	GTCTC	2 cut(s)	32, 170
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	5 cut(s)	342, 507, 564, 633, 738
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	3 cut(s)	68, 207, 504
BlsI	GCNGC	3 cut(s)	69, 208, 505
BmcAI	AGTACT	1 cut(s)	893
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	77, 770
BmiI	GGNNCC	3 cut(s)	79, 369, 408
BmrI	ACTGGG	2 cut(s)	239, 701
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	2 cut(s)	239, 701
Bpu10I	CCTNAGC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	363, 512
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 225, 255
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 677, 768, 922
Bse118I	RCCGGY	2 cut(s)	292, 499
Bse1I	ACTGG	2 cut(s)	234, 696
BseDI	CCNNGG	2 cut(s)	363, 512
BseGI	GGATG	5 cut(s)	51, 433, 552, 598, 687
BseLI	CCNNNNNNNGG	4 cut(s)	74, 677, 768, 922
BseMII	CTCAG	3 cut(s)	207, 266, 615
BseNI	ACTGG	2 cut(s)	234, 696
BseRI	GAGGAG	3 cut(s)	119, 158, 216
BseXI	GCAGC	2 cut(s)	218, 490
BshFI	GGCC	2 cut(s)	646, 772
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	293, 500
BslFI	GGGAC	2 cut(s)	63, 703
BslI	CCNNNNNNNGG	4 cut(s)	74, 677, 768, 922
BsmAI	GTCTC	2 cut(s)	32, 170
BsmFI	GGGAC	2 cut(s)	63, 703
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	646, 772
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp1407I	TGTACA	1 cut(s)	857
BspACI	CCGC	4 cut(s)	68, 323, 404, 597
BspANI	GGCC	2 cut(s)	646, 772
BspCNI	CTCAG	3 cut(s)	208, 265, 616
BspLI	GGNNCC	3 cut(s)	79, 369, 408
BspPI	GGATC	4 cut(s)	264, 362, 375, 590
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	292, 499
BsrGI	TGTACA	1 cut(s)	857
BsrI	ACTGG	2 cut(s)	234, 696
BssAI	RCCGGY	2 cut(s)	292, 499
BssECI	CCNNGG	2 cut(s)	363, 512
BssSI	CACGAG	2 cut(s)	149, 315
Bst2BI	CACGAG	2 cut(s)	149, 315
Bst4CI	ACNGT	5 cut(s)	77, 164, 796, 862, 917
Bst6I	CTCTTC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	294, 672
BstDEI	CTNAG	6 cut(s)	216, 252, 372, 624, 641, 732
BstDSI	CCRYGG	2 cut(s)	363, 512
BstF5I	GGATG	5 cut(s)	51, 433, 552, 598, 687
BstH2I	RGCGCY	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	707
BstMAI	GTCTC	2 cut(s)	32, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	218, 490
BstX2I	RGATCY	2 cut(s)	256, 367
BstYI	RGATCY	2 cut(s)	256, 367
BsuRI	GGCC	2 cut(s)	646, 772
BtgI	CCRYGG	2 cut(s)	363, 512
BtsCI	GGATG	5 cut(s)	51, 433, 552, 598, 687
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	294, 672
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	707
Cfr10I	RCCGGY	2 cut(s)	292, 499
Cfr13I	GGNCC	2 cut(s)	77, 770
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	440, 858, 892
CspCI	CAANNNNNGTGG	4 cut(s)	73, 108, 818, 853
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	3 cut(s)	440, 858, 892
DdeI	CTNAG	6 cut(s)	216, 252, 372, 624, 641, 732
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	602
FaeI	CATG	1 cut(s)	608
FaqI	GGGAC	2 cut(s)	63, 703
FatI	CATG	1 cut(s)	604
FbaI	TGATCA	2 cut(s)	157, 850
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	68, 207, 504
FokI	GGATG	5 cut(s)	38, 440, 559, 605, 694
Fsp4HI	GCNGC	3 cut(s)	68, 207, 504
FspBI	CTAG	5 cut(s)	342, 507, 564, 633, 738
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	3 cut(s)	68, 207, 504
HaeII	RGCGCY	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	646, 772
HapII	CCGG	2 cut(s)	293, 500
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	1 cut(s)	608
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HinfI	GANTC	3 cut(s)	223, 435, 460
HpaII	CCGG	2 cut(s)	293, 500
HphI	GGTGA	4 cut(s)	428, 489, 551, 793
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	254, 711, 923
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	1 cut(s)	652
HpyCH4III	ACNGT	5 cut(s)	77, 164, 796, 862, 917
HpyCH4V	TGCA	1 cut(s)	875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	6 cut(s)	216, 252, 372, 624, 641, 732
Hsp92II	CATG	1 cut(s)	608
HspAI	GCGC	1 cut(s)	705
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Ksp22I	TGATCA	2 cut(s)	157, 850
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	9 cut(s)	154, 215, 239, 245, 306, 513, 677, 684, 696
Lsp1109I	GCAGC	2 cut(s)	218, 490
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	5 cut(s)	342, 507, 564, 633, 738
MboII	GAAGA	3 cut(s)	196, 481, 493
MfeI	CAATTG	1 cut(s)	901
MflI	RGATCY	2 cut(s)	256, 367
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	9 cut(s)	243, 301, 332, 557, 696, 805, 876, 901, 927
MlyI	GAGTC	1 cut(s)	444
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	6 cut(s)	33, 237, 267, 353, 525, 573
MspA1I	CMGCKG	1 cut(s)	70
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	2 cut(s)	293, 500
MunI	CAATTG	1 cut(s)	901
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	1 cut(s)	560
NaeI	GCCGGC	1 cut(s)	294
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	3 cut(s)	79, 369, 408
NmeAIII	GCCGAG	1 cut(s)	85
PctI	GAATGC	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	223, 460
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	3 cut(s)	69, 208, 505
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	79, 369, 408
PspPI	GGNCC	2 cut(s)	77, 770
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	256, 367
RsaI	GTAC	3 cut(s)	441, 859, 893
RsaNI	GTAC	3 cut(s)	440, 858, 892
SaqAI	TTAA	6 cut(s)	33, 237, 267, 353, 525, 573
SatI	GCNGC	3 cut(s)	68, 207, 504
Sau96I	GGNCC	2 cut(s)	77, 770
ScaI	AGTACT	1 cut(s)	893
SchI	GAGTC	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	4 cut(s)	89, 253, 316, 531
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	9 cut(s)	243, 301, 332, 557, 696, 805, 876, 901, 927
SsiI	CCGC	4 cut(s)	68, 323, 404, 597
SspMI	CTAG	5 cut(s)	342, 507, 564, 633, 738
TaaI	ACNGT	5 cut(s)	77, 164, 796, 862, 917
TaqI	TCGA	1 cut(s)	612
TasI	AATT	9 cut(s)	243, 301, 332, 557, 696, 805, 876, 901, 927
TatI	WGTACW	2 cut(s)	857, 891
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	223, 460
Tru1I	TTAA	6 cut(s)	33, 237, 267, 353, 525, 573
Tru9I	TTAA	6 cut(s)	33, 237, 267, 353, 525, 573
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	206, 503
TspDTI	ATGAA	2 cut(s)	563, 840
TspGWI	ACGGA	3 cut(s)	44, 380, 501
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	5 cut(s)	342, 507, 564, 633, 738
ZrmI	AGTACT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.