Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002502.1

Orthogroup ID

OG0020681

Physical Location & Seq

Genomic Coordinates Forward (+)

1914 .. 2768

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgccggccatttccttccagccattagaaatttcgagtgatggaaatgaggtaacgggccgaaatagacgagcagacgagcctgaacatgatgacactaatttcgactactccaaaagaacgcaatggcttcgagctgccattttggaagccagcgatggtctggtttcggttgcatcgctgatgatgggcgtgggagctgtgaaacaagatgtgaaaggcatgctccttcccggggttgctgggctagtagcagtggcatgcatgcagcatggccctaggggaatttgtctccgtgtacgctcagtacgacacggagatctcccaaatgaagagagagatgatggaacaaaatggcggagacgagaatactgcagaagagcaggcaaagaagaagaagaatatgctgccgagcccggtgaaagcagcatagcattggccattgcattttctataggtgcagtggtgcctttgctgggatctgtgtttatgaaggaccacaaggtaggaacggctgtggtgtctgttttggcaagcgttgcattggttgtgttgggaggagtaggagcagtgttgggtgggacaccagttctgaggtcttgtgcaagggtattcctaggagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

208

Amino Acids

22.1

Weight (kDa)

6.44

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	44 - 88	2e-07	VIT family
VIT1	PF01988	132 - 208	6.9e-12	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020681)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025383
rosa_multiflora	Rmu_sc0002169.1_g000026 Rmu_sc0002502.1_g000002
rosa_samantha	Rh3BG067000 Rh3CG065400
rosa_wichuraiana	Rw3G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	2 cut(s)	6, 438
AcsI	RAATTY	2 cut(s)	30, 285
AfaI	GTAC	2 cut(s)	300, 309
AfiI	CCNNNNNNNGG	2 cut(s)	235, 476
AluBI	AGCT	2 cut(s)	137, 200
AluI	AGCT	2 cut(s)	137, 200
Alw26I	GTCTC	2 cut(s)	296, 355
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	6, 58, 274, 438
ApeKI	GCWGC	4 cut(s)	137, 268, 407, 426
ApoI	RAATTY	2 cut(s)	30, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspA2I	CCTAGG	2 cut(s)	278, 616
AspS9I	GGNCC	3 cut(s)	58, 275, 496
AsuC2I	CCSGG	3 cut(s)	234, 235, 417
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	496
AvrII	CCTAGG	2 cut(s)	278, 616
BalI	TGGCCA	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	417
BbvI	GCAGC	4 cut(s)	124, 280, 394, 438
BccI	CCATC	4 cut(s)	35, 152, 181, 338
BceAI	ACGGC	1 cut(s)	528
BcgI	CGANNNNNNTGC	4 cut(s)	113, 147, 354, 388
BcnI	CCSGG	3 cut(s)	234, 235, 417
BcoDI	GTCTC	2 cut(s)	296, 355
BfaI	CTAG	3 cut(s)	248, 279, 617
BfmI	CTRYAG	2 cut(s)	373, 453
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	138, 269, 408, 427
BlnI	CCTAGG	2 cut(s)	278, 616
BlsI	GCNGC	4 cut(s)	139, 270, 409, 428
Bme1390I	CCNGG	3 cut(s)	234, 235, 417
Bme18I	GGWCC	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	58, 275, 496
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	234, 235, 417
BmsI	GCATC	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	234, 235, 417
BsaJI	CCNNGG	4 cut(s)	233, 234, 278, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 476
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	131, 441
BseDI	CCNNGG	4 cut(s)	233, 234, 278, 616
BseLI	CCNNNNNNNGG	2 cut(s)	235, 476
BseMI	GCAATG	2 cut(s)	131, 441
BseMII	CTCAG	2 cut(s)	318, 584
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	4 cut(s)	124, 280, 394, 438
BseYI	CCCAGC	2 cut(s)	242, 475
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	8, 60, 276, 440
BshNI	GGYRCC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	5, 234, 417
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	235, 476
BsmAI	GTCTC	2 cut(s)	296, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	8, 60, 276, 440
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	319, 479
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	4 cut(s)	8, 60, 276, 440
BspCNI	CTCAG	2 cut(s)	317, 585
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	466
BsrDI	GCAATG	2 cut(s)	131, 441
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	4 cut(s)	233, 234, 278, 616
BssMI	GATC	2 cut(s)	319, 479
BssT1I	CCWWGG	2 cut(s)	278, 616
Bst6I	CTCTTC	2 cut(s)	327, 373
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	7 cut(s)	6, 154, 224, 262, 266, 385, 535
BstDEI	CTNAG	2 cut(s)	304, 593
BstKTI	GATC	2 cut(s)	322, 482
BstMAI	GTCTC	2 cut(s)	296, 355
BstMBI	GATC	2 cut(s)	319, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNSI	RCATGY	3 cut(s)	226, 264, 268
BstSCI	CCNGG	3 cut(s)	232, 233, 415
BstSFI	CTRYAG	2 cut(s)	373, 453
BstV1I	GCAGC	4 cut(s)	124, 280, 394, 438
BstX2I	RGATCY	2 cut(s)	319, 479
BstYI	RGATCY	2 cut(s)	319, 479
BsuRI	GGCC	4 cut(s)	8, 60, 276, 440
BtgZI	GCGATG	2 cut(s)	162, 171
BtsI	GCAGTG	3 cut(s)	261, 468, 576
BtsIMutI	CAGTG	3 cut(s)	261, 468, 576
Cac8I	GCNNGC	7 cut(s)	6, 154, 224, 262, 266, 385, 535
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	58, 275, 496
Cfr9I	CCCGGG	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	299, 308
CviAII	CATG	5 cut(s)	89, 223, 261, 265, 272
CviQI	GTAC	2 cut(s)	299, 308
DdeI	CTNAG	2 cut(s)	304, 593
DpnI	GATC	2 cut(s)	321, 481
DpnII	GATC	2 cut(s)	319, 479
EaeI	YGGCCR	2 cut(s)	6, 438
Eam1104I	CTCTTC	2 cut(s)	327, 373
EarI	CTCTTC	2 cut(s)	327, 373
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	278, 616
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	278, 616
EcoT22I	ATGCAT	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	278, 616
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	5 cut(s)	92, 226, 264, 268, 275
FaiI	YATR	9 cut(s)	90, 224, 262, 266, 273, 405, 431, 455, 491
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	5 cut(s)	88, 222, 260, 264, 271
Fnu4HI	GCNGC	4 cut(s)	138, 269, 408, 427
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	138, 269, 408, 427
FspBI	CTAG	3 cut(s)	248, 279, 617
GluI	GCNGC	4 cut(s)	138, 269, 408, 427
GsaI	CCCAGC	2 cut(s)	246, 479
HaeIII	GGCC	4 cut(s)	8, 60, 276, 440
HapII	CCGG	3 cut(s)	5, 234, 417
Hin1II	CATG	5 cut(s)	92, 226, 264, 268, 275
HpaII	CCGG	3 cut(s)	5, 234, 417
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	594
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	25, 239, 487
HpyCH4V	TGCA	8 cut(s)	176, 264, 268, 375, 446, 461, 542, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	304, 593
Hsp92II	CATG	5 cut(s)	92, 226, 264, 268, 275
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	319, 479
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	197, 231, 566
Lsp1109I	GCAGC	4 cut(s)	124, 280, 394, 438
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	3 cut(s)	248, 279, 617
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	321, 481
MboI	GATC	2 cut(s)	319, 479
MboII	GAAGA	5 cut(s)	344, 390, 404, 407, 410
MflI	RGATCY	2 cut(s)	319, 479
MhlI	GDGCHC	1 cut(s)	417
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	3 cut(s)	30, 100, 285
MluNI	TGGCCA	1 cut(s)	440
MnlI	CCTC	4 cut(s)	43, 551, 588, 614
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	4
MscI	TGGCCA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	3 cut(s)	5, 234, 417
MspR9I	CCNGG	3 cut(s)	234, 235, 417
MwoI	GCNNNNNNNGC	1 cut(s)	539
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	3 cut(s)	234, 235, 417
NdeII	GATC	2 cut(s)	319, 479
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	92, 226, 264, 268, 275
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	3 cut(s)	226, 264, 268
PaeI	GCATGC	3 cut(s)	226, 264, 268
PciSI	GCTCTTC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	4 cut(s)	139, 270, 409, 428
PspFI	CCCAGC	2 cut(s)	242, 475
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	3 cut(s)	58, 275, 496
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	319, 479
RsaI	GTAC	2 cut(s)	300, 309
RsaNI	GTAC	2 cut(s)	299, 308
SapI	GCTCTTC	1 cut(s)	373
SatI	GCNGC	4 cut(s)	138, 269, 408, 427
Sau3AI	GATC	2 cut(s)	319, 479
Sau96I	GGNCC	3 cut(s)	58, 275, 496
ScrFI	CCNGG	3 cut(s)	234, 235, 417
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	6 cut(s)	54, 139, 202, 460, 507, 599
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	2 cut(s)	373, 453
SinI	GGWCC	1 cut(s)	496
SmaI	CCCGGG	1 cut(s)	235
SphI	GCATGC	3 cut(s)	226, 264, 268
Sse9I	AATT	3 cut(s)	30, 100, 285
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	3 cut(s)	248, 279, 617
StyD4I	CCNGG	3 cut(s)	232, 233, 415
StyI	CCWWGG	2 cut(s)	278, 616
TaqI	TCGA	3 cut(s)	35, 105, 133
TasI	AATT	3 cut(s)	30, 100, 285
TscAI	CASTG	3 cut(s)	261, 468, 576
TseI	GCWGC	4 cut(s)	137, 268, 407, 426
TspDTI	ATGAA	2 cut(s)	345, 506
TspGWI	ACGGA	2 cut(s)	284, 330
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	3 cut(s)	261, 468, 576
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	30, 285
XceI	RCATGY	3 cut(s)	226, 264, 268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmaI	CCCGGG	1 cut(s)	233
XmaJI	CCTAGG	2 cut(s)	278, 616
XspI	CTAG	3 cut(s)	248, 279, 617
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.