Rmu_sc0002516.1_g000010

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002516.1
OG0022719
Physical Location & Seq
Forward (+)
45262 .. 45963
702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atgctttatacttctgttgagtttgtggccatttcttcagcaccagcagcgctagcagtggctgatcccacattatctccctcacctcctccacctacgacctcctcaccttcgacccaccaccgccgcccatctcgatcaaagaaacaaacttttcacataatcaatataaattcacacatccaagaacatatcaaaactccaagatacaaaacagaacgttgtagaaaaaactatgagcttggcaaaacccagatcaaaaagaacgtcggagaagccttcgtgctcgccctcccctggcccgatccccgtggccagcgatctctctctctctctctccaaatccccaaatttgaaaaactcaaaacctcctctccctgcttctgcaaaatcaagctcaccaactccccccaccagttctccgtcgtccctcccatcgtcgaccatgacgccgcccgctctcactcccactccctcaacgcctgcttcaacctcaccaaaccccaaatcgaaaccctaacctctccatctcgatctacaccgccagctgcggcctcaactctaccaagctcctgggccgggtcacctgcgccccgtggtgtaccatctgttcatggccaccaaaaccatcgccgatttgctgagcttgttgccggtgaaggagaagactgggagggtggcgagctcggcagttatggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

233

Amino Acids

25.46

Weight (kDa)

9.66

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 120 - 177 1.4e-09 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022719)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0420151
rosa_multiflora Rmu_sc0002516.1_g000010 Rmu_sc0031229.1_g000001
rosa_roxburghii Rroxscaffold_7G00159690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 441
AciI CCGC 6 cut(s) 124, 127, 453, 457, 542, 551
AclI AACGTT 1 cut(s) 220
AclWI GGATC 2 cut(s) 59, 299
AcoI YGGCCR 3 cut(s) 27, 313, 616
AcsI RAATTY 2 cut(s) 172, 350
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 297, 579
AgsI TTSAA 2 cut(s) 356, 490
AjnI CCWGG 2 cut(s) 296, 572
AluBI AGCT 6 cut(s) 241, 397, 548, 570, 646, 685
AluI AGCT 6 cut(s) 241, 397, 548, 570, 646, 685
Alw21I GWGCWC 2 cut(s) 288, 687
AlwI GGATC 2 cut(s) 59, 299
AlwNI CAGNNNCTG 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 51
AoxI GGCC 6 cut(s) 27, 299, 313, 552, 576, 616
ApeKI GCWGC 2 cut(s) 47, 548
ApoI RAATTY 2 cut(s) 172, 350
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AspLEI GCGC 2 cut(s) 52, 592
AspS9I GGNCC 2 cut(s) 300, 576
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 6 cut(s) 75, 99, 391, 487, 576, 668
AsuNHI GCTAGC 1 cut(s) 52
BalI TGGCCA 3 cut(s) 29, 315, 618
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 2 cut(s) 288, 687
BbvI GCAGC 2 cut(s) 59, 535
BccI CCATC 5 cut(s) 139, 443, 535, 613, 636
BciT130I CCWGG 2 cut(s) 298, 574
BcnI CCSGG 1 cut(s) 580
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 5 cut(s) 48, 127, 453, 549, 552
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 49, 128, 454, 550, 553
Bme1390I CCNGG 3 cut(s) 298, 574, 580
BmgT120I GGNCC 2 cut(s) 300, 576
BmrFI CCNGG 3 cut(s) 298, 574, 580
BmrI ACTGGG 1 cut(s) 679
BmtI GCTAGC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 642
BpuMI CCSGG 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 4 cut(s) 296, 310, 573, 595
BsaXI ACNNNNNCTCC 8 cut(s) 61, 91, 358, 388, 404, 434, 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 579
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 415, 674
BseBI CCWGG 2 cut(s) 298, 574
BseDI CCNNGG 4 cut(s) 296, 310, 573, 595
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 297, 579
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 415, 674
BseRI GAGGAG 3 cut(s) 78, 94, 361
BseXI GCAGC 2 cut(s) 59, 535
BshFI GGCC 6 cut(s) 29, 301, 315, 554, 578, 618
BsiHKAI GWGCWC 2 cut(s) 288, 687
BsiSI CCGG 2 cut(s) 579, 654
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 297, 579
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 6 cut(s) 29, 301, 315, 554, 578, 618
Bsp1286I GDGCHC 2 cut(s) 288, 687
Bsp143I GATC 6 cut(s) 64, 137, 255, 304, 320, 533
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 6 cut(s) 124, 127, 453, 457, 542, 551
BspANI GGCC 6 cut(s) 29, 301, 315, 554, 578, 618
BspCNI CTCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 595
BspOI GCTAGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 59, 299
BsrBI CCGCTC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 415, 674
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 296, 310, 573, 595
BssMI GATC 6 cut(s) 64, 137, 255, 304, 320, 533
BssNI GRCGYC 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 298, 574
BstACI GRCGYC 1 cut(s) 450
BstC8I GCNNGC 7 cut(s) 54, 288, 317, 457, 484, 546, 683
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 2 cut(s) 310, 595
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 592
BstKTI GATC 6 cut(s) 67, 140, 258, 307, 323, 536
BstMBI GATC 6 cut(s) 64, 137, 255, 304, 320, 533
BstMWI GCNNNNNNNGC 3 cut(s) 47, 53, 687
BstNI CCWGG 2 cut(s) 298, 574
BstPI GGTNACC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 296, 572, 578
BstV1I GCAGC 2 cut(s) 59, 535
BstV2I GAAGAC 1 cut(s) 672
BstXI CCANNNNNNTGG 1 cut(s) 573
BsuRI GGCC 6 cut(s) 29, 301, 315, 554, 578, 618
BtgI CCRYGG 2 cut(s) 310, 595
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 7 cut(s) 54, 288, 317, 457, 484, 546, 683
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 2 cut(s) 52, 592
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 2 cut(s) 300, 576
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 602
CviAII CATG 2 cut(s) 446, 614
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 1 cut(s) 642
DpnI GATC 6 cut(s) 66, 139, 257, 306, 322, 535
DpnII GATC 6 cut(s) 64, 137, 255, 304, 320, 533
EaeI YGGCCR 3 cut(s) 27, 313, 616
Ecl136II GAGCTC 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 687
Eco47III AGCGCT 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 296, 572
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 2 cut(s) 449, 617
FaiI YATR 8 cut(s) 9, 161, 170, 192, 237, 447, 615, 696
FaqI GGGAC 1 cut(s) 413
FatI CATG 2 cut(s) 445, 613
FauI CCCGC 1 cut(s) 464
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 48, 127, 453, 549, 552
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 5 cut(s) 48, 127, 453, 549, 552
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 51, 591
GluI GCNGC 5 cut(s) 48, 127, 453, 549, 552
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 6 cut(s) 29, 301, 315, 554, 578, 618
HapII CCGG 2 cut(s) 579, 654
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 52, 592
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 2 cut(s) 449, 617
Hin6I GCGC 2 cut(s) 50, 590
HinP1I GCGC 2 cut(s) 50, 590
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HpaII CCGG 2 cut(s) 579, 654
HphI GGTGA 6 cut(s) 75, 99, 391, 487, 576, 668
Hpy166II GTNNAC 2 cut(s) 442, 602
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 135, 531
Hpy8I GTNNAC 2 cut(s) 442, 602
Hpy99I CGWCG 3 cut(s) 272, 428, 443
HpyAV CCTTC 3 cut(s) 120, 289, 653
HpyCH4IV ACGT 2 cut(s) 220, 267
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 53, 687
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 2 cut(s) 220, 267
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 2 cut(s) 449, 617
HspAI GCGC 2 cut(s) 50, 590
Kzo9I GATC 6 cut(s) 64, 137, 255, 304, 320, 533
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 2 cut(s) 59, 535
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 220, 267
MaeIII GTNAC 1 cut(s) 582
MalI GATC 6 cut(s) 66, 139, 257, 306, 322, 535
MbiI CCGCTC 1 cut(s) 459
MboI GATC 6 cut(s) 64, 137, 255, 304, 320, 533
MboII GAAGA 2 cut(s) 27, 677
MhlI GDGCHC 2 cut(s) 288, 687
MlsI TGGCCA 3 cut(s) 29, 315, 618
MluCI AATT 2 cut(s) 172, 350
MluNI TGGCCA 3 cut(s) 29, 315, 618
MmeI TCCRAC 1 cut(s) 250
Mox20I TGGCCA 3 cut(s) 29, 315, 618
MscI TGGCCA 3 cut(s) 29, 315, 618
Msp20I TGGCCA 3 cut(s) 29, 315, 618
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 579, 654
MspR9I CCNGG 3 cut(s) 298, 574, 580
MvaI CCWGG 2 cut(s) 298, 574
MwoI GCNNNNNNNGC 3 cut(s) 47, 53, 687
NciI CCSGG 1 cut(s) 580
NdeII GATC 6 cut(s) 64, 137, 255, 304, 320, 533
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 449, 617
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 1 cut(s) 582
PaqCI CACCTGC 1 cut(s) 595
PkrI GCNGC 5 cut(s) 49, 128, 454, 550, 553
Psp124BI GAGCTC 1 cut(s) 687
Psp1406I AACGTT 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 296, 572
PspEI GGTNACC 1 cut(s) 582
PspGI CCWGG 2 cut(s) 296, 572
PspPI GGNCC 2 cut(s) 300, 576
PsrI GAACNNNNNNTAC 2 cut(s) 594, 626
PstNI CAGNNNCTG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SacI GAGCTC 1 cut(s) 687
SalI GTCGAC 1 cut(s) 440
SatI GCNGC 5 cut(s) 48, 127, 453, 549, 552
Sau3AI GATC 6 cut(s) 64, 137, 255, 304, 320, 533
Sau96I GGNCC 2 cut(s) 300, 576
ScrFI CCNGG 3 cut(s) 298, 574, 580
SduI GDGCHC 2 cut(s) 288, 687
Sse9I AATT 2 cut(s) 172, 350
SsiI CCGC 6 cut(s) 124, 127, 453, 457, 542, 551
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 296, 572, 578
TaiI ACGT 2 cut(s) 223, 270
TaqI TCGA 5 cut(s) 113, 136, 441, 510, 532
TasI AATT 2 cut(s) 172, 350
TauI GCSGC 3 cut(s) 129, 455, 554
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 2 cut(s) 47, 548
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 63
XapI RAATTY 2 cut(s) 172, 350
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.