Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002529.1

Orthogroup ID

OG0018152

Physical Location & Seq

Genomic Coordinates Reverse (-)

106937 .. 108670

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002529.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgcatcagatgtatgatgcttcgagagagaagatatctaaccagaaagcccccaagcaaatcaaggcaataagccagaaattatctacattagctttggaagaggagaagcaatctgttagtaaacatttcatgaagaagaagaaggaggagaggaggaagaagaagaagaagtccaaggtaccacgttgtgcttgctgtgcatcgtataaaggtaagatgaagaaggagatacatatatgggtaaaggccacaaagaaagaattacgtaggttgtacccagagctggaagggcagtggaggaggcaacaagaagtgcgtaggaagaatcatcttgagatgttggccgcttacaaaaagcggcaagaagaggaagaggaagaggaagaggaacttgaggaacttgaggaggagcagaaagaagaagagatagaggaagaggaactggaagagggaccagaagagaaacagaaacgaattgagaaagagaaagagatggagcaacagaaacagaaagaggaggaggaatttgctgcttttttggcaagcgaaaaggaaaannnnntaccggctgggaaactgccacaagaagaggaagagagcacagacaaaactgaaacttatgtcagtgatgatgagaatagtgaggtagaatccttgaaagatcctccagctacctccaaggatattccatctagtaggtctcaaggtcgaaagagggcattggagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

244

Amino Acids

28.71

Weight (kDa)

5.67

Isoelectric Point (pI)

102.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018152)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323981
rosa_multiflora	Rmu_sc0002529.1_g000028 Rmu_sc0002529.1_g000029
rosa_roxburghii	Rroxscaffold_4G00326010
rosa_rugosa	Rorug01G0041000
rosa_samantha	Rh1AG058900 Rh1CG060900 Rh1CG061000 Rh1DG064900 Rh1DG065000
rosa_wichuraiana	Rw1G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	2 cut(s)	348, 361
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	183, 278
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	661
AluBI	AGCT	3 cut(s)	95, 286, 674
AluI	AGCT	3 cut(s)	95, 286, 674
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	708
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	2 cut(s)	249, 345
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	527
Asp718I	GGTACC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	490, 700
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	1 cut(s)	696
BisI	GCNGC	3 cut(s)	348, 362, 534
BlsI	GCNGC	3 cut(s)	349, 363, 535
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	183, 456
BmsI	GCATC	3 cut(s)	7, 13, 212
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	4 cut(s)	356, 416, 425, 690
BsaAI	YACGTR	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	177, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	177, 681
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	8 cut(s)	119, 164, 169, 316, 422, 425, 533, 536
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	2 cut(s)	251, 347
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	251, 347
Bso31I	GGTCTC	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp143I	GATC	1 cut(s)	664
BspACI	CCGC	2 cut(s)	348, 361
BspANI	GGCC	2 cut(s)	251, 347
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	183, 456
BspPI	GGATC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	177, 681
BssMI	GATC	1 cut(s)	664
BssT1I	CCWWGG	2 cut(s)	177, 681
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	196, 547
BstKTI	GATC	1 cut(s)	667
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 292, 542
BstSNI	TACGTA	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	251, 347
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 634
Cac8I	GCNNGC	2 cut(s)	196, 547
CciI	TCATGA	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	182, 277
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	50, 75, 95, 251, 286, 347, 572, 674
CviKI_1	RGCY	8 cut(s)	50, 75, 95, 251, 286, 347, 572, 674
CviQI	GTAC	2 cut(s)	182, 277
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	177, 681
Eco31I	GGTCTC	1 cut(s)	708
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	177, 681
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	177, 681
FaeI	CATG	1 cut(s)	136
FaiI	YATR	7 cut(s)	15, 134, 210, 237, 239, 241, 624
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	348, 362, 534
Fsp4HI	GCNGC	3 cut(s)	348, 362, 534
FspBI	CTAG	1 cut(s)	696
GluI	GCNGC	3 cut(s)	348, 362, 534
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	251, 347
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	1 cut(s)	136
HinfI	GANTC	2 cut(s)	328, 653
HpaII	CCGG	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	24, 133, 335
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	139, 220, 284
HpyCH4IV	ACGT	2 cut(s)	187, 268
HpyCH4V	TGCA	2 cut(s)	4, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 292, 542
HpySE526I	ACGT	2 cut(s)	187, 268
Hsp92II	CATG	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	664
LmnI	GCTCC	2 cut(s)	412, 499
LpnPI	CCDG	9 cut(s)	56, 89, 272, 294, 431, 471, 558, 582, 684
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	3 cut(s)	7, 13, 212
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	2 cut(s)	187, 268
MalI	GATC	1 cut(s)	666
MboI	GATC	1 cut(s)	664
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	4 cut(s)	80, 263, 477, 527
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	200, 292, 542
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	183, 456
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	328, 653
PkrI	GCNGC	3 cut(s)	349, 363, 535
Ppu21I	YACGTR	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	183, 456
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	2 cut(s)	183, 278
RsaNI	GTAC	2 cut(s)	182, 277
SatI	GCNGC	3 cut(s)	348, 362, 534
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	3 cut(s)	7, 13, 212
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	4 cut(s)	335, 395, 404, 705
SmoI	CTYRAG	4 cut(s)	335, 395, 404, 705
SnaBI	TACGTA	1 cut(s)	269
Sse9I	AATT	4 cut(s)	80, 263, 477, 527
SsiI	CCGC	2 cut(s)	348, 361
SspMI	CTAG	1 cut(s)	696
StyI	CCWWGG	2 cut(s)	177, 681
TaiI	ACGT	2 cut(s)	190, 271
TaqI	TCGA	2 cut(s)	23, 712
TasI	AATT	4 cut(s)	80, 263, 477, 527
TauI	GCSGC	2 cut(s)	350, 364
TfiI	GAWTC	2 cut(s)	328, 653
TscAI	CASTG	2 cut(s)	302, 634
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	121, 149, 236
TspRI	CASTG	2 cut(s)	302, 634
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.