Rw1G005050

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
9690102 .. 9693342
3241 bp
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UTR
Exon/CDS
Intron
Rw1G005050.1

Sequence Viewer

Length: 732 bp
ATGTTGGTCATTGGCTTTTATCCTATCTGTAGCACCGAGGTTCGTTGTTTGGTGGATGTACCTGAACAAAAGTCATGGAGATGGATATTCCAGTGCCGGATGTATGATGCTTCGAGAGAGAAGATATCTAACCAGAAAGCCCCCGAGCAAATCAAGGCAATAAGCCAGAAATTATCTACATTAGCTTTGGAAGAGGAGAAGCAATCTGTTAGTAAACATTTCATGAAGAAGAAGGAGGAGAGGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGTCCAAGGTACCACGTTGTGCTTGCTGTGCATCGTATAAAGGTAAGATGAAGAAGGAGATACATATATGGGTAAAGGCCACAAAGAAAGAATTACGTAGGTTGTACCCAGAGCTGGAAGGGCAGTGGAGGAGGCAACAAGAAGTGCGTAGGAAGAATCATCTTGAGATGTTGGCCGCTTACAAAAAGCGGCAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACTTGAGGAACTTGAGGAGGAGCAGAAAGAAGAAGAGATAGCGGAAGAGGAACTGGAAGAGGGACCAGAAGAGAAACAGAAACGAATTGAGAAAGAGAAAGAGATGGAGCAACAGAAACAGAAAGAGGAGGAGGAATTCGCTGCTTTTTTGGCGAGGGAAGAGAAACAGGCCACCGAGAGTATGGTGCGTATTTTTTCCGCTTATACAAGAAAAGGAACTTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

29.42

Weight (kDa)

5.99

Isoelectric Point (pI)

94.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AciI CCGC 4 cut(s) 447, 460, 545, 702
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 638
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 3 cut(s) 60, 282, 377
AfiI CCNNNNNNNGG 1 cut(s) 385
AluBI AGCT 2 cut(s) 185, 385
AluI AGCT 2 cut(s) 185, 385
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 3 cut(s) 348, 444, 672
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 638
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 631
BccI CCATC 2 cut(s) 75, 601
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 3 cut(s) 447, 461, 645
BlsI GCNGC 3 cut(s) 448, 462, 646
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 282, 567
BmsI GCATC 2 cut(s) 97, 311
BpuEI CTTGAG 3 cut(s) 455, 527, 536
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 36, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 91, 561
BseDI CCNNGG 2 cut(s) 36, 276
BseGI GGATG 2 cut(s) 61, 105
BseLI CCNNNNNNNGG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 91, 561
BseRI GAGGAG 8 cut(s) 209, 251, 256, 415, 533, 536, 644, 647
BseXI GCAGC 1 cut(s) 631
BshFI GGCC 3 cut(s) 350, 446, 674
BshNI GGYRCC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 3 cut(s) 350, 446, 674
BsoBI CYCGRG 1 cut(s) 143
BspACI CCGC 4 cut(s) 447, 460, 545, 702
BspANI GGCC 3 cut(s) 350, 446, 674
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 282, 567
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 91, 561
BssECI CCNNGG 2 cut(s) 36, 276
BssT1I CCWWGG 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 295
BstF5I GGATG 2 cut(s) 61, 105
BstMWI GCNNNNNNNGC 3 cut(s) 299, 391, 653
BstSFI CTRYAG 1 cut(s) 28
BstSNI TACGTA 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 350, 446, 674
BtsCI GGATG 2 cut(s) 61, 105
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 98, 401
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 59, 281, 376
CviAII CATG 2 cut(s) 75, 223
CviJI RGCY 8 cut(s) 15, 140, 165, 185, 350, 385, 446, 674
CviKI_1 RGCY 8 cut(s) 15, 140, 165, 185, 350, 385, 446, 674
CviQI GTAC 3 cut(s) 59, 281, 376
DraIII CACNNNGTG 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 444
Eco105I TACGTA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 638
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 78, 226
FaiI YATR 9 cut(s) 76, 105, 224, 309, 336, 338, 340, 686, 708
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 579
FatI CATG 2 cut(s) 74, 222
Fnu4HI GCNGC 3 cut(s) 447, 461, 645
FokI GGATG 2 cut(s) 68, 112
Fsp4HI GCNGC 3 cut(s) 447, 461, 645
GluI GCNGC 3 cut(s) 447, 461, 645
HaeIII GGCC 3 cut(s) 350, 446, 674
HapII CCGG 1 cut(s) 97
Hin1II CATG 2 cut(s) 78, 226
HinfI GANTC 1 cut(s) 427
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 114, 223, 434
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 5 cut(s) 226, 244, 253, 319, 383
HpyCH4IV ACGT 2 cut(s) 286, 367
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 391, 653
HpySE526I ACGT 2 cut(s) 286, 367
Hsp92II CATG 2 cut(s) 78, 226
KpnI GGTACC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 523, 610
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 2 cut(s) 97, 311
MaeII ACGT 2 cut(s) 286, 367
MluCI AATT 4 cut(s) 170, 362, 588, 638
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 299, 391, 653
NlaIII CATG 2 cut(s) 78, 226
NlaIV GGNNCC 2 cut(s) 282, 567
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 3 cut(s) 448, 462, 646
Ppu21I YACGTR 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 282, 567
PspPI GGNCC 1 cut(s) 566
RsaI GTAC 3 cut(s) 60, 282, 377
RsaNI GTAC 3 cut(s) 59, 281, 376
RseI CAYNNNNRTG 1 cut(s) 79
SatI GCNGC 3 cut(s) 447, 461, 645
Sau96I GGNCC 1 cut(s) 566
SetI ASST 9 cut(s) 42, 64, 187, 282, 289, 316, 370, 374, 387
SfaNI GCATC 2 cut(s) 97, 311
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 3 cut(s) 434, 506, 515
SmoI CTYRAG 3 cut(s) 434, 506, 515
SnaBI TACGTA 1 cut(s) 368
Sse9I AATT 4 cut(s) 170, 362, 588, 638
SsiI CCGC 4 cut(s) 447, 460, 545, 702
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 289, 370
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 170, 362, 588, 638
TauI GCSGC 2 cut(s) 449, 463
TfiI GAWTC 1 cut(s) 427
TscAI CASTG 2 cut(s) 98, 401
TseI GCWGC 1 cut(s) 644
TspDTI ATGAA 3 cut(s) 211, 239, 335
TspRI CASTG 2 cut(s) 98, 401
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.