Rmu_sc0002658.1_g000006

Mitochondrial Rho GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002658.1
OG0023088
Physical Location & Seq
Forward (+)
18132 .. 20182
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 768 bp
ctgagacaccaccgagactgccttcctggtccagtcgtcagctcggggaagtggtttctccgtcgtcagcttcgccgtggtttcgagtcttgctacaaacacataagactgcaaatggcatgtgattgcagactagtgttaattacagaaagcaacagacttgctgctaaagatgatctggattcatttccattggccatacagcattctacaagggttagtcaggatatgggaacagaggctccagttaaaggaagaatgccgtgtttatgctgcaaggaagaatgcctccagttaaaggatgataaagcttcattcaatgattggcttattaggaggcctatgtcctcgaacctgatggcttcacaaagctatcaccttcaaattccccaggaaattgcaggagacttttttttttttctttctttctttctttcgggatgtcccggtcccgtcccggtcccggcccggtcctgttcgggttcgggatggtcgggatcaattctcaaaaagtgccataaccgtcccgtcccgatttttatttccgggtccgggaccgggatcaccagaatttcgtcccgtcccgtcccatgcccagccctactcggacctgataaaggtttctcttccagcaccagtcgggctttggattgggcctatgatccaattggtatgggccgtcttgtggcatccatcaccatacacgtgccaatgaacctagcggccgacagtgggacacgtcttctcccgccacgccctactccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006839 GO:0006915 GO:0006928 GO:0006996 GO:0007005 GO:0007006 GO:0007017 GO:0007018 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008219 GO:0008637 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010970 GO:0012501 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0019725 GO:0019867 GO:0022414 GO:0023052 GO:0030154 GO:0030705 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0034643 GO:0035794 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046902 GO:0046907 GO:0047497 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0072384 GO:0090559 GO:0097190 GO:0097345 GO:0098573 GO:0098588 GO:0098805 GO:0099111 GO:1902108 GO:1902110 GO:1902686 GO:1905710
KEGG Pathways
Metabolic & Signaling
ko04137 ko04214 map04137 map04214
Pfam Domains
Protein Families
EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

255

Amino Acids

28.11

Weight (kDa)

9.28

Isoelectric Point (pI)

74.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023088)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002658.1_g000006
rosa_samantha Rh2BG371400 Rh3BG277000 Rh6AG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 722, 749
AclWI GGATC 3 cut(s) 505, 569, 656
AcoI YGGCCR 2 cut(s) 195, 723
AcsI RAATTY 2 cut(s) 384, 570
AcvI CACGTG 1 cut(s) 706
AfiI CCNNNNNNNGG 8 cut(s) 251, 298, 463, 552, 558, 617, 685, 732
AflIII ACRYGT 2 cut(s) 703, 737
AgsI TTSAA 2 cut(s) 319, 383
AhlI ACTAGT 1 cut(s) 133
AjiI CACGTC 1 cut(s) 740
AjnI CCWGG 2 cut(s) 25, 390
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 4 cut(s) 42, 70, 311, 372
AluI AGCT 4 cut(s) 42, 70, 311, 372
Alw26I GTCTC 2 cut(s) 9, 399
AlwI GGATC 3 cut(s) 505, 569, 656
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 6 cut(s) 195, 338, 465, 654, 676, 723
ApeKI GCWGC 2 cut(s) 164, 273
ApoI RAATTY 2 cut(s) 384, 570
AsuC2I CCSGG 7 cut(s) 447, 458, 464, 469, 547, 553, 559
AsuHPI GGTGA 3 cut(s) 368, 556, 688
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 7 cut(s) 29, 449, 460, 471, 549, 555, 608
BalI TGGCCA 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 734
BbvI GCAGC 2 cut(s) 151, 260
BccI CCATC 3 cut(s) 352, 483, 701
BceAI ACGGC 3 cut(s) 60, 247, 663
BciT130I CCWGG 2 cut(s) 27, 392
BcnI CCSGG 7 cut(s) 447, 458, 464, 469, 547, 553, 559
BcoDI GTCTC 2 cut(s) 9, 399
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 134, 719
BisI GCNGC 3 cut(s) 165, 274, 723
BlsI GCNGC 3 cut(s) 166, 275, 724
Bme1390I CCNGG 9 cut(s) 27, 392, 447, 458, 464, 469, 547, 553, 559
Bme18I GGWCC 7 cut(s) 29, 449, 460, 471, 549, 555, 608
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 740
BmiI GGNNCC 5 cut(s) 243, 451, 462, 550, 556
BmrFI CCNGG 9 cut(s) 27, 392, 447, 458, 464, 469, 547, 553, 559
BmsI GCATC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 734
BpmI CTGGAG 2 cut(s) 228, 275
BpuMI CCSGG 7 cut(s) 447, 458, 464, 469, 547, 553, 559
BsaAI YACGTR 1 cut(s) 706
BsaJI CCNNGG 2 cut(s) 76, 390
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 729, 759
Bsc4I CCNNNNNNNGG 8 cut(s) 251, 298, 463, 552, 558, 617, 685, 732
Bse1I ACTGG 4 cut(s) 32, 245, 292, 636
BseBI CCWGG 2 cut(s) 27, 392
BseDI CCNNGG 2 cut(s) 76, 390
BseGI GGATG 4 cut(s) 307, 446, 494, 689
BseLI CCNNNNNNNGG 8 cut(s) 251, 298, 463, 552, 558, 617, 685, 732
BseNI ACTGG 4 cut(s) 32, 245, 292, 636
BseX3I CGGCCG 1 cut(s) 723
BseXI GCAGC 2 cut(s) 151, 260
BseYI CCCAGC 1 cut(s) 595
Bsh1285I CGRYCG 1 cut(s) 726
BshFI GGCC 6 cut(s) 197, 340, 467, 656, 678, 725
BsiEI CGRYCG 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 7 cut(s) 447, 458, 464, 469, 546, 552, 558
BslI CCNNNNNNNGG 8 cut(s) 251, 298, 463, 552, 558, 617, 685, 732
BsmAI GTCTC 2 cut(s) 9, 399
BsmI GAATGC 3 cut(s) 205, 264, 290
BsnI GGCC 6 cut(s) 197, 340, 467, 656, 678, 725
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 4 cut(s) 175, 497, 561, 661
BspACI CCGC 2 cut(s) 722, 749
BspANI GGCC 6 cut(s) 197, 340, 467, 656, 678, 725
BspLI GGNNCC 5 cut(s) 243, 451, 462, 550, 556
BspPI GGATC 3 cut(s) 505, 569, 656
BsrI ACTGG 4 cut(s) 32, 245, 292, 636
BssECI CCNNGG 2 cut(s) 76, 390
BssMI GATC 4 cut(s) 175, 497, 561, 661
Bst2UI CCWGG 2 cut(s) 27, 392
Bst4CI ACNGT 2 cut(s) 524, 731
Bst6I CTCTTC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 706
BstDEI CTNAG 1 cut(s) 2
BstDSI CCRYGG 1 cut(s) 76
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 4 cut(s) 307, 446, 494, 689
BstKTI GATC 4 cut(s) 178, 500, 564, 664
BstMAI GTCTC 2 cut(s) 9, 399
BstMBI GATC 4 cut(s) 175, 497, 561, 661
BstMCI CGRYCG 1 cut(s) 726
BstNI CCWGG 2 cut(s) 27, 392
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 9 cut(s) 25, 390, 445, 456, 462, 467, 545, 551, 557
BstV1I GCAGC 2 cut(s) 151, 260
BstV2I GAAGAC 1 cut(s) 734
BstZI CGGCCG 1 cut(s) 723
BsuRI GGCC 6 cut(s) 197, 340, 467, 656, 678, 725
BtgI CCRYGG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 740
BtsCI GGATG 4 cut(s) 307, 446, 494, 689
BtsIMutI CAGTG 1 cut(s) 736
CviAII CATG 2 cut(s) 120, 591
DdeI CTNAG 1 cut(s) 2
DpnI GATC 4 cut(s) 177, 499, 563, 663
DpnII GATC 4 cut(s) 175, 497, 561, 661
EaeI YGGCCR 2 cut(s) 195, 723
EagI CGGCCG 1 cut(s) 723
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
EclXI CGGCCG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 340
Eco47I GGWCC 7 cut(s) 29, 449, 460, 471, 549, 555, 608
Eco52I CGGCCG 1 cut(s) 723
Eco72I CACGTG 1 cut(s) 706
Eco88I CYCGRG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoRII CCWGG 2 cut(s) 25, 390
FaeI CATG 2 cut(s) 123, 594
FatI CATG 2 cut(s) 119, 590
FauI CCCGC 1 cut(s) 756
Fnu4HI GCNGC 3 cut(s) 165, 274, 723
FokI GGATG 4 cut(s) 314, 453, 501, 676
Fsp4HI GCNGC 3 cut(s) 165, 274, 723
FspBI CTAG 2 cut(s) 134, 719
GluI GCNGC 3 cut(s) 165, 274, 723
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 2 cut(s) 228, 275
HaeIII GGCC 6 cut(s) 197, 340, 467, 656, 678, 725
HapII CCGG 7 cut(s) 447, 458, 464, 469, 546, 552, 558
Hin1II CATG 2 cut(s) 123, 594
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 86, 182
HpaII CCGG 7 cut(s) 447, 458, 464, 469, 546, 552, 558
HphI GGTGA 3 cut(s) 368, 556, 688
Hpy188I TCNGA 1 cut(s) 608
Hpy188III TCNNGA 6 cut(s) 179, 224, 438, 486, 495, 532
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 32, 389
HpyCH4III ACNGT 2 cut(s) 524, 731
HpyCH4IV ACGT 2 cut(s) 705, 739
HpyCH4V TGCA 4 cut(s) 112, 129, 276, 401
HpyF3I CTNAG 1 cut(s) 2
HpySE526I ACGT 2 cut(s) 705, 739
Hsp92II CATG 2 cut(s) 123, 594
Kzo9I GATC 4 cut(s) 175, 497, 561, 661
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 151, 260
LweI GCATC 1 cut(s) 698
MaeI CTAG 2 cut(s) 134, 719
MaeII ACGT 2 cut(s) 705, 739
MalI GATC 4 cut(s) 177, 499, 563, 663
MboI GATC 4 cut(s) 175, 497, 561, 661
MboII GAAGA 4 cut(s) 267, 293, 618, 734
MfeI CAATTG 1 cut(s) 666
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 6 cut(s) 141, 384, 396, 501, 570, 666
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 232, 299, 330, 358
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 3 cut(s) 140, 249, 296
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 7 cut(s) 447, 458, 464, 469, 546, 552, 558
MspR9I CCNGG 9 cut(s) 27, 392, 447, 458, 464, 469, 547, 553, 559
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 3 cut(s) 205, 264, 290
MvaI CCWGG 2 cut(s) 27, 392
NciI CCSGG 7 cut(s) 447, 458, 464, 469, 547, 553, 559
NdeII GATC 4 cut(s) 175, 497, 561, 661
NlaIII CATG 2 cut(s) 123, 594
NlaIV GGNNCC 5 cut(s) 243, 451, 462, 550, 556
NspI RCATGY 1 cut(s) 123
PceI AGGCCT 1 cut(s) 340
PctI GAATGC 3 cut(s) 205, 264, 290
PfeI GAWTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 3 cut(s) 166, 275, 724
PleI GAGTC 1 cut(s) 94
PmaCI CACGTG 1 cut(s) 706
PmlI CACGTG 1 cut(s) 706
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 706
Psp6I CCWGG 2 cut(s) 25, 390
PspCI CACGTG 1 cut(s) 706
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 2 cut(s) 25, 390
PspN4I GGNNCC 5 cut(s) 243, 451, 462, 550, 556
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 3 cut(s) 140, 249, 296
SatI GCNGC 3 cut(s) 165, 274, 723
Sau3AI GATC 4 cut(s) 175, 497, 561, 661
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 9 cut(s) 27, 392, 447, 458, 464, 469, 547, 553, 559
SfaNI GCATC 1 cut(s) 698
SinI GGWCC 7 cut(s) 29, 449, 460, 471, 549, 555, 608
SmiMI CAYNNNNRTG 1 cut(s) 704
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 6 cut(s) 141, 384, 396, 501, 570, 666
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 2 cut(s) 722, 749
SspMI CTAG 2 cut(s) 134, 719
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 9 cut(s) 25, 390, 445, 456, 462, 467, 545, 551, 557
TaaI ACNGT 2 cut(s) 524, 731
TaiI ACGT 2 cut(s) 708, 742
TaqI TCGA 2 cut(s) 84, 350
TasI AATT 6 cut(s) 141, 384, 396, 501, 570, 666
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 3 cut(s) 140, 249, 296
Tru9I TTAA 3 cut(s) 140, 249, 296
TscAI CASTG 1 cut(s) 736
TseI GCWGC 2 cut(s) 164, 273
TspDTI ATGAA 3 cut(s) 174, 303, 728
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 736
VpaK11BI GGWCC 7 cut(s) 29, 449, 460, 471, 549, 555, 608
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 2 cut(s) 384, 570
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XspI CTAG 2 cut(s) 134, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.