Rh3BG277000

histone methyltransferase activity (H3-K4 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0023088
Physical Location & Seq
Reverse (-)
27117994 .. 27125134
7141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG277000.1

Sequence Viewer

Length: 585 bp
ATGAAGTTTTCTTTATTGCACAAAGCACGATGGCGAGTTCAATCATCAGCCATGAAAGTTGAAGCCATGTGGAGATTCAACCGTGTAGGTTTGTATATTCTTGTTCAAGAGGAGGTTCATCAAATGCTTCAGCTGATATTCGCGGTGGCTTTCTCGGCGGTGCCTCTGACGCTTTACGTGCCGCCGATCCGAAGCCTGAGCTTGTTCGTGGAGACCATCGAAGACATCGTCCGGCAAAGCCTGAATTACACGGGCAGTGTTTACCCTCGTGTTCGCGTCGCCTGGTCTCGTTTCTTCAACAACCTCCTGCGCTTTTCCAGGACTCCAGTTGTTTATTCTGCAGACGCCACCAGACTCTACCTATTATATTTTTCTAAGGCTCCATATATCAATTCAGCTCATAAGCATCACCGAGACACTGACCCATTCCCAATTTCCCAAAGTTCCTGCCTTCCTGGTCACCGAGACACCACCGAGACTGCCTTCCTGGTCCCGTCGTTAGCTCGGGGAAGTGGTTTCTCCGTCGTCAGCTTCGCCGTGGTTTCGAGTCTTACTACAAACACACGCCGTGGTTTGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.15

Weight (kDa)

10.31

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023088)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002658.1_g000006
rosa_samantha Rh2BG371400 Rh3BG277000 Rh6AG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 2 cut(s) 143, 276
AciI CCGC 3 cut(s) 143, 158, 182
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 569
AgsI TTSAA 5 cut(s) 41, 62, 79, 107, 298
AjnI CCWGG 4 cut(s) 281, 317, 454, 486
AluBI AGCT 5 cut(s) 133, 201, 398, 503, 531
AluI AGCT 5 cut(s) 133, 201, 398, 503, 531
Alw26I GTCTC 5 cut(s) 206, 291, 408, 459, 470
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 504
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 401, 452
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 160
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 2 cut(s) 24, 224
BceAI ACGGC 2 cut(s) 521, 552
BciT130I CCWGG 4 cut(s) 283, 319, 456, 488
BcoDI GTCTC 5 cut(s) 206, 291, 408, 459, 470
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 4 cut(s) 283, 319, 456, 488
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 162, 381, 492
BmrFI CCNGG 4 cut(s) 283, 319, 456, 488
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 2 cut(s) 206, 291
BsaJI CCNNGG 2 cut(s) 537, 568
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 4 cut(s) 283, 319, 456, 488
BseDI CCNNGG 2 cut(s) 537, 568
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 143, 276
BshNI GGYRCC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 476
BsmAI GTCTC 5 cut(s) 206, 291, 408, 459, 470
BsmFI GGGAC 1 cut(s) 476
Bso31I GGTCTC 2 cut(s) 206, 291
BsoBI CYCGRG 1 cut(s) 504
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 3 cut(s) 143, 158, 182
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 2 cut(s) 143, 276
BspLI GGNNCC 3 cut(s) 162, 381, 492
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 160
BspTNI GGTCTC 2 cut(s) 206, 291
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 537, 568
BssMI GATC 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 4 cut(s) 283, 319, 456, 488
Bst4CI ACNGT 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 197, 375
BstDSI CCRYGG 2 cut(s) 537, 568
BstEII GGTNACC 1 cut(s) 458
BstFNI CGCG 2 cut(s) 143, 276
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 5 cut(s) 206, 291, 408, 459, 470
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 155, 169, 178
BstNI CCWGG 4 cut(s) 283, 319, 456, 488
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 4 cut(s) 281, 317, 454, 486
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 2 cut(s) 143, 276
BstV2I GAAGAC 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 537, 568
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 262, 417
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 490
CseI GACGC 3 cut(s) 178, 265, 353
CviAII CATG 2 cut(s) 52, 67
DdeI CTNAG 2 cut(s) 197, 375
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
DraIII CACNNNGTG 1 cut(s) 569
Eco31I GGTCTC 2 cut(s) 206, 291
Eco47I GGWCC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 4 cut(s) 281, 317, 454, 486
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 7 cut(s) 53, 68, 96, 367, 385, 387, 402
FaqI GGGAC 1 cut(s) 476
FatI CATG 2 cut(s) 51, 66
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
GlaI GCGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 309
HapII CCGG 1 cut(s) 232
HgaI GACGC 3 cut(s) 178, 265, 353
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 4 cut(s) 75, 322, 354, 547
HpaII CCGG 1 cut(s) 232
HphI GGTGA 2 cut(s) 401, 452
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 168, 191
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 3 cut(s) 281, 499, 527
HpyAV CCTTC 2 cut(s) 461, 493
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 19, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 169, 178
HpyF3I CTNAG 2 cut(s) 197, 375
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 385
LweI GCATC 1 cut(s) 415
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 233, 286
MluCI AATT 3 cut(s) 244, 391, 432
MlyI GAGTC 3 cut(s) 316, 348, 556
MnlI CCTC 5 cut(s) 103, 106, 174, 276, 314
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 4 cut(s) 283, 319, 456, 488
MvaI CCWGG 4 cut(s) 283, 319, 456, 488
MvnI CGCG 2 cut(s) 143, 276
MwoI GCNNNNNNNGC 3 cut(s) 155, 169, 178
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 3 cut(s) 162, 381, 492
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 1 cut(s) 75
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 3 cut(s) 316, 348, 555
PpsI GAGTC 3 cut(s) 316, 348, 555
Ppu21I YACGTR 1 cut(s) 178
Psp6I CCWGG 4 cut(s) 281, 317, 454, 486
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 4 cut(s) 281, 317, 454, 486
PspN4I GGNNCC 3 cut(s) 162, 381, 492
PspPI GGNCC 1 cut(s) 490
PstI CTGCAG 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 133
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 3 cut(s) 316, 348, 556
ScrFI CCNGG 4 cut(s) 283, 319, 456, 488
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 490
Sse9I AATT 3 cut(s) 244, 391, 432
SsiI CCGC 3 cut(s) 143, 158, 182
StyD4I CCNGG 4 cut(s) 281, 317, 454, 486
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 219, 545
TasI AATT 3 cut(s) 244, 391, 432
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 75
TscAI CASTG 2 cut(s) 262, 424
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 3 cut(s) 17, 68, 107
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 2 cut(s) 262, 424
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.