Rh6AG169900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
27329015 .. 27339726
10712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG169900.1

Sequence Viewer

Length: 288 bp
ATGCGAGTGTACATAAGAGGCTCCATCAATTCAGCTCATAAGCATCACCGAGACACCGACCCATTCCCAATTTCCCAAAGTTCCTGCCTTCCTGGTCACCGAGACACCACCAAGACGCCTTCCTGGTCCAGTCGTCAGCTCGGGGAAGTGGTTTCTCCGTCGTCAGCTTCGCCGTGGTTTCGAGTCTTGCTTCAAACACATAAGACTGCAAATATTGATGAGAATGTTCAGAGGGAAACCAGATTGATGGGTAGTGGAAGCATATTCTATTATGTGGTTTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

9.74

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023088)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002658.1_g000006
rosa_samantha Rh2BG371400 Rh3BG277000 Rh6AG169900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 194, 282
AjnI CCWGG 2 cut(s) 91, 122
AluBI AGCT 3 cut(s) 35, 139, 167
AluI AGCT 3 cut(s) 35, 139, 167
Alw26I GTCTC 2 cut(s) 45, 96
Ama87I CYCGRG 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 38, 89
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 126
BccI CCATC 2 cut(s) 32, 241
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 93, 124
BcoDI GTCTC 2 cut(s) 45, 96
Bme1390I CCNGG 2 cut(s) 93, 124
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 93, 124
BmsI GCATC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 93, 124
BseDI CCNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 45, 96
BsoBI CYCGRG 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 9
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 93, 124
BstACI GRCGYC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 95
BstMAI GTCTC 2 cut(s) 45, 96
BstNI CCWGG 2 cut(s) 93, 124
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 91, 122
BstXI CCANNNNNNTGG 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 126
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 4 cut(s) 21, 35, 139, 167
CviKI_1 RGCY 4 cut(s) 21, 35, 139, 167
CviQI GTAC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 91, 122
FaiI YATR 5 cut(s) 14, 39, 201, 263, 273
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 116
HinfI GANTC 1 cut(s) 183
HphI GGTGA 2 cut(s) 38, 89
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 98, 129
HpyCH4V TGCA 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 78, 97, 105, 109, 136, 142, 253
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 95
MluCI AATT 3 cut(s) 28, 69, 282
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 11, 225
MspR9I CCNGG 2 cut(s) 93, 124
MvaI CCWGG 2 cut(s) 93, 124
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 95
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 91, 122
PspEI GGTNACC 1 cut(s) 95
PspGI CCWGG 2 cut(s) 91, 122
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 126
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 93, 124
SetI ASST 3 cut(s) 37, 141, 169
SfaNI GCATC 1 cut(s) 52
SinI GGWCC 1 cut(s) 126
Sse9I AATT 3 cut(s) 28, 69, 282
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 91, 122
TaqI TCGA 1 cut(s) 181
TasI AATT 3 cut(s) 28, 69, 282
TatI WGTACW 1 cut(s) 9
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.