Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002737.1

Orthogroup ID

OG0022644

Physical Location & Seq

Genomic Coordinates Reverse (-)

54985 .. 56701

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002737.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggttaaagaattggattggtgggttctgctaggcctcattgatcagtgggctggtgttaaggtaaggttttgcttatcaggatcttctgattcaatgattagactatgggatcttggtcagcaaagatgcgtgcattcttatgcggtgcacacagattctgtttgggcacttgccagtacgccaacgtttagtcatttgtacttgacagacttgaccacaagagagagtcttttgctttgccaaggagaacaccccattctgcagttggctctagatgatgatagcatatgggttgcaacaacagattcttcagttaatagatggcctgctgaggggcgcaatcctcagaaaattatccaaagaggtggcgctttcttggccggaaatttgtcattctcaagagcaagggtagaactccagaagcagcttcatgaacaacttgaggttgaggctgaagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

DUF3337 WD40

Protein Analysis

154

Amino Acids

17.42

Weight (kDa)

5.26

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022644)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132041
rosa_multiflora	Rmu_sc0002737.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325900
rosa_samantha	Rh4DG143500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	2 cut(s)	91, 120
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	181, 203
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	96
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Alw21I	GWGCWC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	91, 120
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	34, 326, 381
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	2 cut(s)	342, 374
BaeGI	GKGCMC	2 cut(s)	153, 172
Bbv12I	GWGCWC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	2 cut(s)	32, 275
BfmI	CTRYAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	385, 464
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	324, 362
BseNI	ACTGG	1 cut(s)	177
BseSI	GKGCMC	2 cut(s)	153, 172
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	3 cut(s)	36, 328, 383
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	36, 328, 383
Bsp1286I	GDGCHC	2 cut(s)	153, 172
Bsp143I	GATC	3 cut(s)	43, 83, 112
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	3 cut(s)	36, 328, 383
BspCNI	CTCAG	2 cut(s)	325, 361
BspHI	TCATGA	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	2 cut(s)	91, 120
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	43, 83, 112
BssT1I	CCWWGG	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	134, 330
BstDEI	CTNAG	2 cut(s)	333, 348
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	342, 374
BstKTI	GATC	3 cut(s)	46, 86, 115
BstMBI	GATC	3 cut(s)	43, 83, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	263
BstSLI	GKGCMC	2 cut(s)	153, 172
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	83, 112
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	2 cut(s)	83, 112
BsuRI	GGCC	3 cut(s)	36, 328, 383
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	134, 330
CaiI	CAGNNNCTG	1 cut(s)	161
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	2 cut(s)	342, 374
Csp6I	GTAC	2 cut(s)	180, 202
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	7 cut(s)	36, 53, 272, 328, 383, 430, 455
CviKI_1	RGCY	7 cut(s)	36, 53, 272, 328, 383, 430, 455
CviQI	GTAC	2 cut(s)	180, 202
DdeI	CTNAG	2 cut(s)	333, 348
DpnI	GATC	3 cut(s)	45, 85, 114
DpnII	GATC	3 cut(s)	43, 83, 112
EaeI	YGGCCR	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	437
FaiI	YATR	5 cut(s)	109, 144, 290, 292, 435
FatI	CATG	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	2 cut(s)	32, 275
GlaI	GCGC	2 cut(s)	341, 373
GluI	GCNGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	3 cut(s)	36, 328, 383
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	342, 374
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	340, 372
HinP1I	GCGC	2 cut(s)	340, 372
HinfI	GANTC	4 cut(s)	92, 158, 229, 308
HpaII	CCGG	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	91, 351
Hpy188III	TCNNGA	5 cut(s)	81, 275, 402, 421, 434
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	136, 151, 265, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	333, 348
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	340, 372
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	43, 83, 112
LpnPI	CCDG	6 cut(s)	39, 66, 190, 342, 397, 434
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	32, 275
MaeII	ACGT	1 cut(s)	188
MalI	GATC	3 cut(s)	45, 85, 114
MboI	GATC	3 cut(s)	43, 83, 112
MboII	GAAGA	2 cut(s)	78, 303
MflI	RGATCY	2 cut(s)	83, 112
MhlI	GDGCHC	2 cut(s)	153, 172
MluCI	AATT	3 cut(s)	11, 354, 388
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	6 cut(s)	47, 328, 357, 359, 439, 445
MseI	TTAA	3 cut(s)	6, 60, 318
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeI	CATATG	1 cut(s)	290
NdeII	GATC	3 cut(s)	43, 83, 112
NlaIII	CATG	1 cut(s)	437
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	36
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	92, 158, 308
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp1406I	AACGTT	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	83, 112
RsaI	GTAC	2 cut(s)	181, 203
RsaNI	GTAC	2 cut(s)	180, 202
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	6, 60, 318
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	43, 83, 112
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	153, 172
SetI	ASST	6 cut(s)	66, 71, 191, 370, 432, 450
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	400, 443
SmoI	CTYRAG	2 cut(s)	400, 443
Sse9I	AATT	3 cut(s)	11, 354, 388
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	32, 275
StuI	AGGCCT	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	191
TasI	AATT	3 cut(s)	11, 354, 388
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	92, 158, 308
Tru1I	TTAA	3 cut(s)	6, 60, 318
Tru9I	TTAA	3 cut(s)	6, 60, 318
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	422, 450
TspRI	CASTG	1 cut(s)	53
VneI	GTGCAC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	2 cut(s)	32, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.