Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002809.1

Orthogroup ID

OG0021623

Physical Location & Seq

Genomic Coordinates Reverse (-)

39529 .. 40101

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggatggaggaagcaacaaagcaactgggagtagtgctaacatgctttgcaggcggagcagttccaagtggactcccactatagatcagataagaatcctcaatgagcttttctacaacaagggagttaggtcctcaactgtagagcaggttcagaggatcactctccagctgaaaaggtacggaaagatcgagggcaagaacatcctttattggttccacaaccacaaggctcgggagaaacagaagaagaggttcacttcggatgttcatgtgcccatgcaaagatcaaggcttgttggtagatccattaatctcaattttgggtcaactagttctactggtgtttatggatccattaatctcaattttaggtcaactagttctattggtgttgatggatctattaaggagattgaaacccttccactgttccccatgcatggtgaggacaacattggcaacatgaagactacttccgagggaggtagcggctatggcggtggctctcgcattcccttgagctcagcctcaactcctccggagctgctgacttggcttagtatagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

190

Amino Acids

20.99

Weight (kDa)

10.05

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	1.6e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021623)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000082.1_g000051 Rmu_sc0002809.1_g000017
rosa_rugosa	Rorug05G0498900 Rorug06G0000500 Rorug06G0000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	3 cut(s)	55, 492, 501
AclWI	GGATC	5 cut(s)	167, 300, 348, 361, 409
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	419
AhlI	ACTAGT	2 cut(s)	332, 380
AluBI	AGCT	4 cut(s)	109, 172, 525, 547
AluI	AGCT	4 cut(s)	109, 172, 525, 547
Alw21I	GWGCWC	1 cut(s)	527
AlwI	GGATC	5 cut(s)	167, 300, 348, 361, 409
Ama87I	CYCGRG	1 cut(s)	234
Aor13HI	TCCGGA	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	547
AseI	ATTAAT	2 cut(s)	312, 360
Asp700I	GAANNNNTTC	2 cut(s)	254, 423
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	1 cut(s)	392
BcuI	ACTAGT	2 cut(s)	332, 380
BfaI	CTAG	2 cut(s)	333, 381
BfmI	CTRYAG	2 cut(s)	81, 141
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	493, 548
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	2 cut(s)	494, 549
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	218, 355
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	31, 346
Bse8I	GATNNNNATC	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	3 cut(s)	10, 204, 271
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	31, 346
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	279, 527
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
Bsp1720I	GCTNAGC	1 cut(s)	526
BspACI	CCGC	3 cut(s)	55, 492, 501
BspCNI	CTCAG	1 cut(s)	539
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	218, 355
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	5 cut(s)	167, 300, 348, 361, 409
BsrI	ACTGG	2 cut(s)	31, 346
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
Bst4CI	ACNGT	2 cut(s)	142, 432
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	526, 560
BstF5I	GGATG	3 cut(s)	10, 204, 271
BstKTI	GATC	7 cut(s)	88, 162, 192, 290, 308, 356, 404
BstMBI	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 57, 498, 556
BstNSI	RCATGY	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	81, 141
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	3 cut(s)	305, 353, 401
BstYI	RGATCY	3 cut(s)	305, 353, 401
BtsCI	GGATG	3 cut(s)	10, 204, 271
BtsIMutI	CAGTG	1 cut(s)	428
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	6 cut(s)	43, 272, 280, 439, 443, 466
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	526, 560
DpnI	GATC	7 cut(s)	87, 161, 191, 289, 307, 355, 403
DpnII	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	6 cut(s)	46, 275, 283, 442, 446, 469
FatI	CATG	6 cut(s)	42, 271, 279, 438, 442, 465
Fnu4HI	GCNGC	2 cut(s)	493, 548
FokI	GGATG	3 cut(s)	17, 191, 278
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	493, 548
FspBI	CTAG	2 cut(s)	333, 381
GluI	GCNGC	2 cut(s)	493, 548
GsuI	CTGGAG	1 cut(s)	152
HapII	CCGG	1 cut(s)	542
Hin1II	CATG	6 cut(s)	46, 275, 283, 442, 446, 469
HincII	GTYRAC	2 cut(s)	330, 378
HindII	GTYRAC	2 cut(s)	330, 378
HinfI	GANTC	2 cut(s)	73, 96
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	4 cut(s)	72, 258, 330, 378
Hpy188I	TCNGA	4 cut(s)	90, 156, 265, 481
Hpy188III	TCNNGA	2 cut(s)	236, 542
Hpy8I	GTNNAC	4 cut(s)	72, 258, 330, 378
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	142, 432
HpyCH4V	TGCA	3 cut(s)	51, 283, 442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 57, 498, 556
HpyF3I	CTNAG	2 cut(s)	526, 560
Hsp92II	CATG	6 cut(s)	46, 275, 283, 442, 446, 469
Kpn2I	TCCGGA	1 cut(s)	541
Kzo9I	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
LmnI	GCTCC	2 cut(s)	57, 544
LpnPI	CCDG	6 cut(s)	12, 37, 134, 182, 327, 555
Lsp1109I	GCAGC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	333, 381
MalI	GATC	7 cut(s)	87, 161, 191, 289, 307, 355, 403
MboI	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
MboII	GAAGA	3 cut(s)	259, 262, 481
MflI	RGATCY	3 cut(s)	305, 353, 401
MhlI	GDGCHC	2 cut(s)	279, 527
MluCI	AATT	2 cut(s)	319, 367
MlyI	GAGTC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	444
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	2 cut(s)	254, 423
MseI	TTAA	3 cut(s)	312, 360, 408
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	52, 57, 498, 556
NdeII	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
NlaIII	CATG	6 cut(s)	46, 275, 283, 442, 446, 469
NlaIV	GGNNCC	2 cut(s)	218, 355
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	2 cut(s)	254, 423
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	494, 549
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	132
PshBI	ATTAAT	2 cut(s)	312, 360
Psp124BI	GAGCTC	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	218, 355
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PsuI	RGATCY	3 cut(s)	305, 353, 401
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	527
SaqAI	TTAA	3 cut(s)	312, 360, 408
SatI	GCNGC	2 cut(s)	493, 548
Sau3AI	GATC	7 cut(s)	85, 159, 189, 287, 305, 353, 401
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	279, 527
SfcI	CTRYAG	2 cut(s)	81, 141
SinI	GGWCC	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SpeI	ACTAGT	2 cut(s)	332, 380
Sse9I	AATT	2 cut(s)	319, 367
SsiI	CCGC	3 cut(s)	55, 492, 501
SspMI	CTAG	2 cut(s)	333, 381
SstI	GAGCTC	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	142, 432
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	319, 367
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	312, 360, 408
Tru9I	TTAA	3 cut(s)	312, 360, 408
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	260, 482
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	2 cut(s)	312, 360
XceI	RCATGY	1 cut(s)	46
XmnI	GAANNNNTTC	2 cut(s)	254, 423
XspI	CTAG	2 cut(s)	333, 381
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.