gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0002943.1_g000024 Rmu_sc0005951.1_g000001 |
| rosa_samantha | Rh6AG471900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 353 |
| Acc36I | ACCTGC | 1 cut(s) | 353 |
| AciI | CCGC | 1 cut(s) | 770 |
| AcoI | YGGCCR | 2 cut(s) | 895, 970 |
| AcsI | RAATTY | 7 cut(s) | 122, 131, 209, 280, 560, 703, 955 |
| AcuI | CTGAAG | 2 cut(s) | 219, 354 |
| AfaI | GTAC | 3 cut(s) | 419, 824, 874 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 358, 725, 774, 810 |
| AjiI | CACGTC | 1 cut(s) | 847 |
| AjnI | CCWGG | 1 cut(s) | 817 |
| AluBI | AGCT | 4 cut(s) | 38, 338, 448, 481 |
| AluI | AGCT | 4 cut(s) | 38, 338, 448, 481 |
| Alw26I | GTCTC | 1 cut(s) | 387 |
| AoxI | GGCC | 5 cut(s) | 776, 812, 834, 895, 970 |
| ApoI | RAATTY | 7 cut(s) | 122, 131, 209, 280, 560, 703, 955 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AsuHPI | GGTGA | 3 cut(s) | 200, 377, 613 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 401, 434 |
| BbsI | GAAGAC | 1 cut(s) | 320 |
| BccI | CCATC | 2 cut(s) | 845, 981 |
| BceAI | ACGGC | 2 cut(s) | 902, 932 |
| BciT130I | CCWGG | 1 cut(s) | 819 |
| BclI | TGATCA | 1 cut(s) | 643 |
| BcoDI | GTCTC | 1 cut(s) | 387 |
| BfaI | CTAG | 3 cut(s) | 504, 581, 870 |
| BfmI | CTRYAG | 1 cut(s) | 931 |
| BfuAI | ACCTGC | 1 cut(s) | 353 |
| BmcAI | AGTACT | 1 cut(s) | 874 |
| Bme1390I | CCNGG | 1 cut(s) | 819 |
| BmgBI | CACGTC | 1 cut(s) | 847 |
| BmrFI | CCNGG | 1 cut(s) | 819 |
| BmsI | GCATC | 4 cut(s) | 76, 358, 497, 781 |
| BpiI | GAAGAC | 1 cut(s) | 320 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 367, 399 |
| BpuEI | CTTGAG | 3 cut(s) | 124, 239, 503 |
| BsaBI | GATNNNNATC | 1 cut(s) | 346 |
| BsaJI | CCNNGG | 2 cut(s) | 498, 818 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 603, 633 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 358, 725, 774, 810 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 346 |
| BseBI | CCWGG | 1 cut(s) | 819 |
| BseDI | CCNNGG | 2 cut(s) | 498, 818 |
| BseGI | GGATG | 2 cut(s) | 91, 602 |
| BseJI | GATNNNNATC | 1 cut(s) | 346 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 358, 725, 774, 810 |
| BseMII | CTCAG | 1 cut(s) | 243 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BshFI | GGCC | 5 cut(s) | 778, 814, 836, 897, 972 |
| BsiSI | CCGG | 4 cut(s) | 898, 950, 969, 979 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 358, 725, 774, 810 |
| BsmAI | GTCTC | 1 cut(s) | 387 |
| BsnI | GGCC | 5 cut(s) | 778, 814, 836, 897, 972 |
| Bsp143I | GATC | 3 cut(s) | 106, 214, 643 |
| BspACI | CCGC | 1 cut(s) | 770 |
| BspANI | GGCC | 5 cut(s) | 778, 814, 836, 897, 972 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BspMI | ACCTGC | 1 cut(s) | 353 |
| BspQI | GCTCTTC | 1 cut(s) | 17 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssECI | CCNNGG | 2 cut(s) | 498, 818 |
| BssMI | GATC | 3 cut(s) | 106, 214, 643 |
| BssT1I | CCWWGG | 1 cut(s) | 498 |
| Bst2UI | CCWGG | 1 cut(s) | 819 |
| Bst4CI | ACNGT | 2 cut(s) | 808, 932 |
| Bst6I | CTCTTC | 4 cut(s) | 17, 75, 756, 766 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 368 |
| BstC8I | GCNNGC | 1 cut(s) | 834 |
| BstDEI | CTNAG | 1 cut(s) | 252 |
| BstF5I | GGATG | 2 cut(s) | 91, 602 |
| BstKTI | GATC | 3 cut(s) | 109, 217, 646 |
| BstMAI | GTCTC | 1 cut(s) | 387 |
| BstMBI | GATC | 3 cut(s) | 106, 214, 643 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 368 |
| BstNI | CCWGG | 1 cut(s) | 819 |
| BstNSI | RCATGY | 1 cut(s) | 620 |
| BstSCI | CCNGG | 1 cut(s) | 817 |
| BstSFI | CTRYAG | 1 cut(s) | 931 |
| BstV2I | GAAGAC | 1 cut(s) | 320 |
| BsuRI | GGCC | 5 cut(s) | 778, 814, 836, 897, 972 |
| BtgZI | GCGATG | 1 cut(s) | 823 |
| BtrI | CACGTC | 1 cut(s) | 847 |
| BtsCI | GGATG | 2 cut(s) | 91, 602 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| BveI | ACCTGC | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 1 cut(s) | 834 |
| Csp6I | GTAC | 3 cut(s) | 418, 823, 873 |
| CviAII | CATG | 4 cut(s) | 244, 575, 617, 963 |
| CviQI | GTAC | 3 cut(s) | 418, 823, 873 |
| DdeI | CTNAG | 1 cut(s) | 252 |
| DpnI | GATC | 3 cut(s) | 108, 216, 645 |
| DpnII | GATC | 3 cut(s) | 106, 214, 643 |
| EaeI | YGGCCR | 2 cut(s) | 895, 970 |
| Eam1104I | CTCTTC | 4 cut(s) | 17, 75, 756, 766 |
| EarI | CTCTTC | 4 cut(s) | 17, 75, 756, 766 |
| Eco130I | CCWWGG | 1 cut(s) | 498 |
| Eco57I | CTGAAG | 2 cut(s) | 219, 354 |
| EcoRII | CCWGG | 1 cut(s) | 817 |
| EcoT14I | CCWWGG | 1 cut(s) | 498 |
| ErhI | CCWWGG | 1 cut(s) | 498 |
| FaeI | CATG | 4 cut(s) | 247, 578, 620, 966 |
| FaiI | YATR | 9 cut(s) | 35, 240, 245, 475, 477, 576, 588, 618, 964 |
| FatI | CATG | 4 cut(s) | 243, 574, 616, 962 |
| FauI | CCCGC | 1 cut(s) | 777 |
| FbaI | TGATCA | 1 cut(s) | 643 |
| FokI | GGATG | 2 cut(s) | 98, 589 |
| FspBI | CTAG | 3 cut(s) | 504, 581, 870 |
| HaeIII | GGCC | 5 cut(s) | 778, 814, 836, 897, 972 |
| HapII | CCGG | 4 cut(s) | 898, 950, 969, 979 |
| Hin1II | CATG | 4 cut(s) | 247, 578, 620, 966 |
| HincII | GTYRAC | 1 cut(s) | 72 |
| HindII | GTYRAC | 1 cut(s) | 72 |
| HinfI | GANTC | 3 cut(s) | 166, 194, 910 |
| HpaI | GTTAAC | 1 cut(s) | 72 |
| HpaII | CCGG | 4 cut(s) | 898, 950, 969, 979 |
| HphI | GGTGA | 3 cut(s) | 200, 377, 613 |
| Hpy166II | GTNNAC | 1 cut(s) | 72 |
| Hpy188I | TCNGA | 4 cut(s) | 128, 199, 253, 643 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 726 |
| Hpy8I | GTNNAC | 1 cut(s) | 72 |
| Hpy99I | CGWCG | 2 cut(s) | 848, 918 |
| HpyAV | CCTTC | 3 cut(s) | 416, 796, 802 |
| HpyCH4III | ACNGT | 2 cut(s) | 808, 932 |
| HpyCH4IV | ACGT | 1 cut(s) | 846 |
| HpyCH4V | TGCA | 4 cut(s) | 232, 371, 510, 832 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 368 |
| HpyF3I | CTNAG | 1 cut(s) | 252 |
| HpySE526I | ACGT | 1 cut(s) | 846 |
| Hsp92II | CATG | 4 cut(s) | 247, 578, 620, 966 |
| Ksp22I | TGATCA | 1 cut(s) | 643 |
| KspAI | GTTAAC | 1 cut(s) | 72 |
| Kzo9I | GATC | 3 cut(s) | 106, 214, 643 |
| LguI | GCTCTTC | 1 cut(s) | 17 |
| LmnI | GCTCC | 1 cut(s) | 445 |
| LweI | GCATC | 4 cut(s) | 76, 358, 497, 781 |
| MaeI | CTAG | 3 cut(s) | 504, 581, 870 |
| MaeII | ACGT | 1 cut(s) | 846 |
| MaeIII | GTNAC | 3 cut(s) | 112, 619, 882 |
| MalI | GATC | 3 cut(s) | 108, 216, 645 |
| MboI | GATC | 3 cut(s) | 106, 214, 643 |
| MfeI | CAATTG | 1 cut(s) | 353 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MseI | TTAA | 5 cut(s) | 42, 71, 176, 450, 633 |
| MspI | CCGG | 4 cut(s) | 898, 950, 969, 979 |
| MspR9I | CCNGG | 1 cut(s) | 819 |
| MunI | CAATTG | 1 cut(s) | 353 |
| MvaI | CCWGG | 1 cut(s) | 819 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 368 |
| NdeII | GATC | 3 cut(s) | 106, 214, 643 |
| NlaIII | CATG | 4 cut(s) | 247, 578, 620, 966 |
| NmuCI | GTSAC | 3 cut(s) | 112, 619, 882 |
| NspI | RCATGY | 1 cut(s) | 620 |
| PaqCI | CACCTGC | 1 cut(s) | 353 |
| PciSI | GCTCTTC | 1 cut(s) | 17 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 2 cut(s) | 166, 910 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| Psp6I | CCWGG | 1 cut(s) | 817 |
| PspGI | CCWGG | 1 cut(s) | 817 |
| RsaI | GTAC | 3 cut(s) | 419, 824, 874 |
| RsaNI | GTAC | 3 cut(s) | 418, 823, 873 |
| SapI | GCTCTTC | 1 cut(s) | 17 |
| SaqAI | TTAA | 5 cut(s) | 42, 71, 176, 450, 633 |
| Sau3AI | GATC | 3 cut(s) | 106, 214, 643 |
| ScaI | AGTACT | 1 cut(s) | 874 |
| SchI | GAGTC | 1 cut(s) | 203 |
| ScrFI | CCNGG | 1 cut(s) | 819 |
| SfaNI | GCATC | 4 cut(s) | 76, 358, 497, 781 |
| SfcI | CTRYAG | 1 cut(s) | 931 |
| SmlI | CTYRAG | 3 cut(s) | 139, 218, 482 |
| SmoI | CTYRAG | 3 cut(s) | 139, 218, 482 |
| SsiI | CCGC | 1 cut(s) | 770 |
| SspI | AATATT | 2 cut(s) | 322, 541 |
| SspMI | CTAG | 3 cut(s) | 504, 581, 870 |
| StyD4I | CCNGG | 1 cut(s) | 817 |
| StyI | CCWWGG | 1 cut(s) | 498 |
| TaaI | ACNGT | 2 cut(s) | 808, 932 |
| TaiI | ACGT | 1 cut(s) | 849 |
| TaqI | TCGA | 1 cut(s) | 913 |
| TatI | WGTACW | 1 cut(s) | 872 |
| TfiI | GAWTC | 2 cut(s) | 166, 910 |
| Tru1I | TTAA | 5 cut(s) | 42, 71, 176, 450, 633 |
| Tru9I | TTAA | 5 cut(s) | 42, 71, 176, 450, 633 |
| TscAI | CASTG | 1 cut(s) | 378 |
| TseFI | GTSAC | 3 cut(s) | 112, 619, 882 |
| Tsp45I | GTSAC | 3 cut(s) | 112, 619, 882 |
| TspRI | CASTG | 1 cut(s) | 378 |
| XapI | RAATTY | 7 cut(s) | 122, 131, 209, 280, 560, 703, 955 |
| XceI | RCATGY | 1 cut(s) | 620 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 3 cut(s) | 504, 581, 870 |
| ZrmI | AGTACT | 1 cut(s) | 874 |