gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0002943.1_g000024 Rmu_sc0005951.1_g000001 |
| rosa_samantha | Rh6AG471900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 254 |
| Acc36I | ACCTGC | 1 cut(s) | 254 |
| AcsI | RAATTY | 2 cut(s) | 110, 181 |
| AcuI | CTGAAG | 3 cut(s) | 75, 120, 255 |
| AfaI | GTAC | 1 cut(s) | 324 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 259 |
| AgsI | TTSAA | 7 cut(s) | 107, 162, 172, 214, 248, 259, 315 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 305 |
| AluBI | AGCT | 1 cut(s) | 239 |
| AluI | AGCT | 1 cut(s) | 239 |
| AoxI | GGCC | 1 cut(s) | 63 |
| ApoI | RAATTY | 2 cut(s) | 110, 181 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 278 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 306, 339 |
| BbsI | GAAGAC | 1 cut(s) | 221 |
| BfuAI | ACCTGC | 1 cut(s) | 254 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 305 |
| BmsI | GCATC | 1 cut(s) | 259 |
| BpiI | GAAGAC | 1 cut(s) | 221 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BsaBI | GATNNNNATC | 1 cut(s) | 247 |
| BsaJI | CCNNGG | 1 cut(s) | 66 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 259 |
| Bse8I | GATNNNNATC | 1 cut(s) | 247 |
| BseDI | CCNNGG | 1 cut(s) | 66 |
| BseJI | GATNNNNATC | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BshFI | GGCC | 1 cut(s) | 65 |
| BslFI | GGGAC | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BsmFI | GGGAC | 1 cut(s) | 293 |
| BsnI | GGCC | 1 cut(s) | 65 |
| Bsp143I | GATC | 2 cut(s) | 115, 285 |
| BspANI | GGCC | 1 cut(s) | 65 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspMI | ACCTGC | 1 cut(s) | 254 |
| BssECI | CCNNGG | 1 cut(s) | 66 |
| BssMI | GATC | 2 cut(s) | 115, 285 |
| BssT1I | CCWWGG | 1 cut(s) | 66 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstKTI | GATC | 2 cut(s) | 118, 288 |
| BstMBI | GATC | 2 cut(s) | 115, 285 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 1 cut(s) | 221 |
| BsuRI | GGCC | 1 cut(s) | 65 |
| BveI | ACCTGC | 1 cut(s) | 254 |
| Csp6I | GTAC | 1 cut(s) | 323 |
| CviAII | CATG | 1 cut(s) | 145 |
| CviJI | RGCY | 3 cut(s) | 65, 158, 239 |
| CviKI_1 | RGCY | 3 cut(s) | 65, 158, 239 |
| CviQI | GTAC | 1 cut(s) | 323 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 2 cut(s) | 117, 287 |
| DpnII | GATC | 2 cut(s) | 115, 285 |
| DriI | GACNNNNNGTC | 1 cut(s) | 305 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 305 |
| Eco130I | CCWWGG | 1 cut(s) | 66 |
| Eco57I | CTGAAG | 3 cut(s) | 75, 120, 255 |
| EcoT14I | CCWWGG | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 66 |
| FaeI | CATG | 1 cut(s) | 148 |
| FaiI | YATR | 3 cut(s) | 38, 141, 146 |
| FaqI | GGGAC | 1 cut(s) | 293 |
| FatI | CATG | 1 cut(s) | 144 |
| HaeIII | GGCC | 1 cut(s) | 65 |
| Hin1II | CATG | 1 cut(s) | 148 |
| HinfI | GANTC | 3 cut(s) | 32, 50, 95 |
| HphI | GGTGA | 2 cut(s) | 101, 278 |
| Hpy188I | TCNGA | 3 cut(s) | 55, 100, 154 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| HpyAV | CCTTC | 2 cut(s) | 253, 321 |
| HpyCH4V | TGCA | 2 cut(s) | 133, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| Hsp92II | CATG | 1 cut(s) | 148 |
| Kzo9I | GATC | 2 cut(s) | 115, 285 |
| LpnPI | CCDG | 2 cut(s) | 225, 249 |
| LweI | GCATC | 1 cut(s) | 259 |
| MaeIII | GTNAC | 2 cut(s) | 7, 17 |
| MalI | GATC | 2 cut(s) | 117, 287 |
| MboI | GATC | 2 cut(s) | 115, 285 |
| MboII | GAAGA | 4 cut(s) | 38, 119, 184, 226 |
| MfeI | CAATTG | 1 cut(s) | 254 |
| MluCI | AATT | 4 cut(s) | 110, 167, 181, 254 |
| MlyI | GAGTC | 2 cut(s) | 26, 104 |
| MnlI | CCTC | 3 cut(s) | 115, 148, 290 |
| MseI | TTAA | 1 cut(s) | 77 |
| MunI | CAATTG | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NdeII | GATC | 2 cut(s) | 115, 285 |
| NlaIII | CATG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| PaqCI | CACCTGC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 50 |
| PleI | GAGTC | 2 cut(s) | 26, 103 |
| PpsI | GAGTC | 2 cut(s) | 26, 103 |
| RsaI | GTAC | 1 cut(s) | 324 |
| RsaNI | GTAC | 1 cut(s) | 323 |
| SaqAI | TTAA | 1 cut(s) | 77 |
| Sau3AI | GATC | 2 cut(s) | 115, 285 |
| SchI | GAGTC | 2 cut(s) | 26, 104 |
| SetI | ASST | 2 cut(s) | 241, 268 |
| SfaNI | GCATC | 1 cut(s) | 259 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 4 cut(s) | 110, 167, 181, 254 |
| StyI | CCWWGG | 1 cut(s) | 66 |
| TaqI | TCGA | 2 cut(s) | 186, 284 |
| TasI | AATT | 4 cut(s) | 110, 167, 181, 254 |
| TfiI | GAWTC | 1 cut(s) | 50 |
| Tru1I | TTAA | 1 cut(s) | 77 |
| Tru9I | TTAA | 1 cut(s) | 77 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 3 cut(s) | 17, 39, 213 |
| XapI | RAATTY | 2 cut(s) | 110, 181 |