gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0002943.1_g000024 Rmu_sc0005951.1_g000001 |
| rosa_samantha | Rh6AG471900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 24 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AfaI | GTAC | 1 cut(s) | 471 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 583 |
| AflII | CTTAAG | 1 cut(s) | 101 |
| AjnI | CCWGG | 1 cut(s) | 149 |
| AluBI | AGCT | 6 cut(s) | 14, 116, 269, 386, 541, 642 |
| AluI | AGCT | 6 cut(s) | 14, 116, 269, 386, 541, 642 |
| AoxI | GGCC | 2 cut(s) | 318, 480 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 621 |
| AsuHPI | GGTGA | 4 cut(s) | 191, 310, 418, 602 |
| AsuII | TTCGAA | 1 cut(s) | 233 |
| BbsI | GAAGAC | 2 cut(s) | 308, 360 |
| BccI | CCATC | 1 cut(s) | 245 |
| BciT130I | CCWGG | 1 cut(s) | 151 |
| BfaI | CTAG | 3 cut(s) | 117, 144, 720 |
| BfrI | CTTAAG | 1 cut(s) | 101 |
| Bme1390I | CCNGG | 1 cut(s) | 151 |
| BmrFI | CCNGG | 1 cut(s) | 151 |
| BmsI | GCATC | 2 cut(s) | 46, 466 |
| BpiI | GAAGAC | 2 cut(s) | 308, 360 |
| BpmI | CTGGAG | 1 cut(s) | 402 |
| Bpu14I | TTCGAA | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BsaBI | GATNNNNATC | 1 cut(s) | 687 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 328, 358 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 583 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| Bse8I | GATNNNNATC | 1 cut(s) | 687 |
| BseBI | CCWGG | 1 cut(s) | 151 |
| BseGI | GGATG | 2 cut(s) | 58, 225 |
| BseJI | GATNNNNATC | 1 cut(s) | 687 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 583 |
| BseMII | CTCAG | 2 cut(s) | 468, 717 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BshFI | GGCC | 2 cut(s) | 320, 482 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 583 |
| BsmI | GAATGC | 1 cut(s) | 331 |
| BsnI | GGCC | 2 cut(s) | 320, 482 |
| Bsp119I | TTCGAA | 1 cut(s) | 233 |
| Bsp143I | GATC | 2 cut(s) | 203, 688 |
| BspANI | GGCC | 2 cut(s) | 320, 482 |
| BspCNI | CTCAG | 2 cut(s) | 469, 716 |
| BspT104I | TTCGAA | 1 cut(s) | 233 |
| BspTI | CTTAAG | 1 cut(s) | 101 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssMI | GATC | 2 cut(s) | 203, 688 |
| Bst2UI | CCWGG | 1 cut(s) | 151 |
| Bst4CI | ACNGT | 1 cut(s) | 367 |
| BstAFI | CTTAAG | 1 cut(s) | 101 |
| BstBI | TTCGAA | 1 cut(s) | 233 |
| BstDEI | CTNAG | 3 cut(s) | 477, 638, 703 |
| BstF5I | GGATG | 2 cut(s) | 58, 225 |
| BstKTI | GATC | 2 cut(s) | 206, 691 |
| BstMBI | GATC | 2 cut(s) | 203, 688 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 326 |
| BstNI | CCWGG | 1 cut(s) | 151 |
| BstSCI | CCNGG | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 2 cut(s) | 308, 360 |
| BsuRI | GGCC | 2 cut(s) | 320, 482 |
| BtsCI | GGATG | 2 cut(s) | 58, 225 |
| Csp6I | GTAC | 1 cut(s) | 470 |
| CviAII | CATG | 1 cut(s) | 322 |
| CviQI | GTAC | 1 cut(s) | 470 |
| DdeI | CTNAG | 3 cut(s) | 477, 638, 703 |
| DpnI | GATC | 2 cut(s) | 205, 690 |
| DpnII | GATC | 2 cut(s) | 203, 688 |
| Eco147I | AGGCCT | 1 cut(s) | 482 |
| EcoRII | CCWGG | 1 cut(s) | 149 |
| FaeI | CATG | 1 cut(s) | 325 |
| FaiI | YATR | 6 cut(s) | 33, 273, 279, 323, 443, 465 |
| FatI | CATG | 1 cut(s) | 321 |
| FokI | GGATG | 2 cut(s) | 65, 232 |
| FspBI | CTAG | 3 cut(s) | 117, 144, 720 |
| GsuI | CTGGAG | 1 cut(s) | 402 |
| HaeIII | GGCC | 2 cut(s) | 320, 482 |
| Hin1II | CATG | 1 cut(s) | 325 |
| HincII | GTYRAC | 1 cut(s) | 370 |
| HindII | GTYRAC | 1 cut(s) | 370 |
| HinfI | GANTC | 6 cut(s) | 140, 163, 347, 422, 505, 697 |
| HphI | GGTGA | 4 cut(s) | 191, 310, 418, 602 |
| Hpy166II | GTNNAC | 2 cut(s) | 156, 370 |
| Hpy188I | TCNGA | 7 cut(s) | 92, 352, 427, 478, 602, 658, 696 |
| Hpy188III | TCNNGA | 4 cut(s) | 40, 167, 647, 738 |
| Hpy8I | GTNNAC | 2 cut(s) | 156, 370 |
| HpyAV | CCTTC | 1 cut(s) | 524 |
| HpyCH4III | ACNGT | 1 cut(s) | 367 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 281, 392, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 326 |
| HpyF3I | CTNAG | 3 cut(s) | 477, 638, 703 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 1 cut(s) | 325 |
| Kzo9I | GATC | 2 cut(s) | 203, 688 |
| LmnI | GCTCC | 1 cut(s) | 383 |
| LweI | GCATC | 2 cut(s) | 46, 466 |
| MaeI | CTAG | 3 cut(s) | 117, 144, 720 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 1 cut(s) | 590 |
| MalI | GATC | 2 cut(s) | 205, 690 |
| MboI | GATC | 2 cut(s) | 203, 688 |
| MboII | GAAGA | 3 cut(s) | 313, 365, 458 |
| MluCI | AATT | 6 cut(s) | 86, 95, 491, 524, 663, 730 |
| MlyI | GAGTC | 2 cut(s) | 431, 691 |
| MmeI | TCCRAC | 1 cut(s) | 658 |
| MnlI | CCTC | 5 cut(s) | 43, 113, 472, 493, 577 |
| MroXI | GAANNNNTTC | 1 cut(s) | 621 |
| MseI | TTAA | 3 cut(s) | 9, 102, 291 |
| MspCI | CTTAAG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 1 cut(s) | 151 |
| Mva1269I | GAATGC | 1 cut(s) | 331 |
| MvaI | CCWGG | 1 cut(s) | 151 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 326 |
| NdeII | GATC | 2 cut(s) | 203, 688 |
| NlaIII | CATG | 1 cut(s) | 325 |
| NmuCI | GTSAC | 1 cut(s) | 590 |
| NspV | TTCGAA | 1 cut(s) | 233 |
| PceI | AGGCCT | 1 cut(s) | 482 |
| PctI | GAATGC | 1 cut(s) | 331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 621 |
| PfeI | GAWTC | 4 cut(s) | 140, 163, 347, 505 |
| PleI | GAGTC | 2 cut(s) | 430, 691 |
| PpsI | GAGTC | 2 cut(s) | 430, 691 |
| Psp1406I | AACGTT | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 149 |
| PspGI | CCWGG | 1 cut(s) | 149 |
| RsaI | GTAC | 1 cut(s) | 471 |
| RsaNI | GTAC | 1 cut(s) | 470 |
| SaqAI | TTAA | 3 cut(s) | 9, 102, 291 |
| Sau3AI | GATC | 2 cut(s) | 203, 688 |
| SchI | GAGTC | 2 cut(s) | 431, 691 |
| ScrFI | CCNGG | 1 cut(s) | 151 |
| SfaNI | GCATC | 2 cut(s) | 46, 466 |
| SfuI | TTCGAA | 1 cut(s) | 233 |
| SmlI | CTYRAG | 2 cut(s) | 101, 581 |
| SmoI | CTYRAG | 2 cut(s) | 101, 581 |
| Sse9I | AATT | 6 cut(s) | 86, 95, 491, 524, 663, 730 |
| SseBI | AGGCCT | 1 cut(s) | 482 |
| SspMI | CTAG | 3 cut(s) | 117, 144, 720 |
| StuI | AGGCCT | 1 cut(s) | 482 |
| StyD4I | CCNGG | 1 cut(s) | 149 |
| TaaI | ACNGT | 1 cut(s) | 367 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 233 |
| TasI | AATT | 6 cut(s) | 86, 95, 491, 524, 663, 730 |
| TatI | WGTACW | 1 cut(s) | 469 |
| TfiI | GAWTC | 4 cut(s) | 140, 163, 347, 505 |
| Tru1I | TTAA | 3 cut(s) | 9, 102, 291 |
| Tru9I | TTAA | 3 cut(s) | 9, 102, 291 |
| TseFI | GTSAC | 1 cut(s) | 590 |
| Tsp45I | GTSAC | 1 cut(s) | 590 |
| TspDTI | ATGAA | 4 cut(s) | 78, 236, 338, 447 |
| Vha464I | CTTAAG | 1 cut(s) | 101 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 584 |
| XmnI | GAANNNNTTC | 1 cut(s) | 621 |
| XspI | CTAG | 3 cut(s) | 117, 144, 720 |