Rmu_sc0003029.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003029.1
OG0020843
Physical Location & Seq
Reverse (-)
1 .. 487
487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 457 bp
atggatttcaggattttagaggcaatcgagagaaaggacacagtcacatttgctagcttagtccgagaaaatgaaggaattctcgagcatagagaagctgatactctgaacacgccattacaccttgtgtcaaagtttggatgccttgaaatggcatctgaaattgtttctttgtgcccggacatggttgctgctgagaataagaaccaggagactccagtccatgaagcttgtcgaacaggaaatccccggattttaaacatcctactggaagctaatcctgaagtagctagtaagcttaacagtaaagagaaaatcagtgcactttctctggcatgtagctacggtcatcttgatgtggtgaggctcttactgaaagagcctgggaagctgggtttagggaaagaagggtttgatcaagcgtgtatacacttggctgtgactggtggacacaagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

5.68

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 32 - 96 1e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54720
rosa_multiflora Rmu_sc0003029.1_g000001
rosa_rugosa Rorug02G0359900
rosa_samantha Rh1BG219000 Rh1DG245400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 151, 184
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 2 cut(s) 207, 382
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
AluBI AGCT 8 cut(s) 57, 98, 230, 275, 290, 298, 342, 391
AluI AGCT 8 cut(s) 57, 98, 230, 275, 290, 298, 342, 391
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 78
AsuC2I CCSGG 2 cut(s) 179, 250
AsuHPI GGTGA 1 cut(s) 373
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 83
BaeGI GKGCMC 2 cut(s) 179, 325
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 209, 384
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 2 cut(s) 179, 250
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 54, 291
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 4 cut(s) 179, 209, 250, 384
BmeT110I CYCGRG 1 cut(s) 83
BmrFI CCNGG 4 cut(s) 179, 209, 250, 384
BmsI GCATC 2 cut(s) 131, 164
BmtI GCTAGC 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 179, 250
BsaJI CCNNGG 2 cut(s) 248, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 184
Bse1I ACTGG 3 cut(s) 218, 273, 448
BseBI CCWGG 2 cut(s) 209, 384
BseDI CCNNGG 2 cut(s) 248, 383
BseGI GGATG 2 cut(s) 146, 261
BseLI CCNNNNNNNGG 2 cut(s) 151, 184
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 218, 273, 448
BseSI GKGCMC 2 cut(s) 179, 325
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 179, 250
BslI CCNNNNNNNGG 2 cut(s) 151, 184
BsmAI GTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 179, 325
Bsp143I GATC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 57
BsrI ACTGG 3 cut(s) 218, 273, 448
BssECI CCNNGG 2 cut(s) 248, 383
BssMI GATC 1 cut(s) 415
BssNAI GTATAC 1 cut(s) 428
Bst1107I GTATAC 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 209, 384
Bst4CI ACNGT 3 cut(s) 43, 305, 347
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 58, 195
BstF5I GGATG 2 cut(s) 146, 261
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 2 cut(s) 209, 384
BstNSI RCATGY 1 cut(s) 339
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 177, 207, 248, 382
BstSLI GKGCMC 2 cut(s) 179, 325
BstV1I GCAGC 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 428
BtsCI GGATG 2 cut(s) 146, 261
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 55
CviAII CATG 3 cut(s) 184, 224, 336
DdeI CTNAG 2 cut(s) 58, 195
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DraI TTTAAA 1 cut(s) 258
DraIII CACNNNGTG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 207, 382
FaeI CATG 3 cut(s) 187, 227, 339
FaiI YATR 5 cut(s) 90, 185, 225, 337, 428
FatI CATG 3 cut(s) 183, 223, 335
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 153, 248
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 54, 291
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 201
HapII CCGG 2 cut(s) 179, 250
Hin1II CATG 3 cut(s) 187, 227, 339
HindIII AAGCTT 2 cut(s) 228, 296
HinfI GANTC 1 cut(s) 214
HpaII CCGG 2 cut(s) 179, 250
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 323, 428, 449
Hpy188I TCNGA 3 cut(s) 65, 108, 160
Hpy188III TCNNGA 5 cut(s) 10, 28, 83, 281, 353
Hpy8I GTNNAC 3 cut(s) 323, 428, 449
HpyAV CCTTC 2 cut(s) 68, 401
HpyCH4III ACNGT 3 cut(s) 43, 305, 347
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 2 cut(s) 58, 195
Hsp92II CATG 3 cut(s) 187, 227, 339
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 131, 164
MaeI CTAG 2 cut(s) 54, 291
MaeIII GTNAC 2 cut(s) 43, 439
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 179, 325
MluCI AATT 2 cut(s) 78, 162
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 2 cut(s) 13, 357
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 257, 300
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 2 cut(s) 179, 250
MspR9I CCNGG 4 cut(s) 179, 209, 250, 384
MvaI CCWGG 2 cut(s) 209, 384
MwoI GCNNNNNNNGC 1 cut(s) 388
NciI CCSGG 2 cut(s) 179, 250
NdeII GATC 1 cut(s) 415
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 187, 227, 339
NmuCI GTSAC 2 cut(s) 43, 439
NspI RCATGY 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 207, 382
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 207, 382
PsyI GACNNNGTC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 2 cut(s) 257, 300
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 179, 209, 250, 384
SduI GDGCHC 2 cut(s) 179, 325
SetI ASST 9 cut(s) 59, 100, 126, 232, 277, 292, 300, 344, 393
SfaNI GCATC 2 cut(s) 131, 164
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 78, 162
SspMI CTAG 2 cut(s) 54, 291
StyD4I CCNGG 4 cut(s) 177, 207, 248, 382
TaaI ACNGT 3 cut(s) 43, 305, 347
TaqI TCGA 3 cut(s) 27, 84, 235
TasI AATT 2 cut(s) 78, 162
Tru1I TTAA 2 cut(s) 257, 300
Tru9I TTAA 2 cut(s) 257, 300
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 43, 439
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 2 cut(s) 43, 439
TspDTI ATGAA 2 cut(s) 87, 240
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 41
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 54, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.