Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0020843

Physical Location & Seq

Genomic Coordinates Forward (+)

45996554 .. 45997196

Gene Structure 643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTTCAGGATTTTAGAGGCAATCGAGAGAAAGGACATAGTCGCATTTGCTAGCTTAGATCGAGAAAATGAAGGAATTCTCGAGCAAAGAGAAGCTGATACTCTGAACACGCCATTACACCTTGTGTCAAAGTTTGGATGCCTTGAAATGGCATCTGAAATTGTGTCTTTGTGCCCGGACATGGTTGCTGCTGAGAATAAGAACCAGGAGACTCCAGTCCATGAAGCTTGTCGAACAGGAAATCCCCGGATTTTAAACATCCTACTGGAAGCTAATCCTGAAGTAGCTAGTAAGCTTAACAGTAAAGAGAAAATCAGTGCACTTTCTCTGGCATGTAGCTATGGTCATCTTGATGTGGTGAGGCTCTTACTGAAAGAGCCTGGGAAGCTGGGTTTAGGGAAAGAAGGGTTTGATCAAGCGTGTATACACTTGGCTGTGACTGGTGGACACAAGGATGTTGTTAAAGAGTTGCTAAGAGTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

162

Amino Acids

17.77

Weight (kDa)

5.4

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	35 - 96	2.1e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	101 - 159	1.3e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54720
rosa_multiflora	Rmu_sc0003029.1_g000001
rosa_rugosa	Rorug02G0359900
rosa_samantha	Rh1BG219000 Rh1DG245400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	151, 184
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	2 cut(s)	207, 382
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	8 cut(s)	57, 98, 230, 275, 290, 298, 342, 391
AluI	AGCT	8 cut(s)	57, 98, 230, 275, 290, 298, 342, 391
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	83
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuC2I	CCSGG	2 cut(s)	179, 250
AsuHPI	GGTGA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	83
BaeGI	GKGCMC	2 cut(s)	179, 325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	209, 384
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	179, 250
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	54, 291
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	4 cut(s)	179, 209, 250, 384
BmeT110I	CYCGRG	1 cut(s)	83
BmrFI	CCNGG	4 cut(s)	179, 209, 250, 384
BmsI	GCATC	2 cut(s)	131, 164
BmtI	GCTAGC	1 cut(s)	57
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	179, 250
BsaJI	CCNNGG	2 cut(s)	248, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 184
Bse1I	ACTGG	3 cut(s)	218, 273, 448
BseBI	CCWGG	2 cut(s)	209, 384
BseDI	CCNNGG	2 cut(s)	248, 383
BseGI	GGATG	3 cut(s)	146, 261, 463
BseLI	CCNNNNNNNGG	2 cut(s)	151, 184
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	3 cut(s)	218, 273, 448
BseSI	GKGCMC	2 cut(s)	179, 325
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	179, 250
BslI	CCNNNNNNNGG	2 cut(s)	151, 184
BsmAI	GTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	179, 325
Bsp143I	GATC	2 cut(s)	61, 415
BspCNI	CTCAG	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	218, 273, 448
BssECI	CCNNGG	2 cut(s)	248, 383
BssMI	GATC	2 cut(s)	61, 415
BssNAI	GTATAC	1 cut(s)	428
Bst1107I	GTATAC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	209, 384
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	58, 195, 476
BstF5I	GGATG	3 cut(s)	146, 261, 463
BstKTI	GATC	2 cut(s)	64, 418
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	61, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	2 cut(s)	209, 384
BstNSI	RCATGY	1 cut(s)	339
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	177, 207, 248, 382
BstSLI	GKGCMC	2 cut(s)	179, 325
BstV1I	GCAGC	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	146, 261, 463
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	55
CviAII	CATG	3 cut(s)	184, 224, 336
DdeI	CTNAG	3 cut(s)	58, 195, 476
DpnI	GATC	2 cut(s)	63, 417
DpnII	GATC	2 cut(s)	61, 415
DraI	TTTAAA	1 cut(s)	258
DraIII	CACNNNGTG	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	207, 382
FaeI	CATG	3 cut(s)	187, 227, 339
FaiI	YATR	6 cut(s)	41, 185, 225, 337, 345, 428
FatI	CATG	3 cut(s)	183, 223, 335
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	3 cut(s)	153, 248, 470
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	54, 291
GluI	GCNGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	2 cut(s)	179, 250
Hin1II	CATG	3 cut(s)	187, 227, 339
HindIII	AAGCTT	2 cut(s)	228, 296
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	179, 250
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	323, 428, 449
Hpy188I	TCNGA	2 cut(s)	108, 160
Hpy188III	TCNNGA	7 cut(s)	10, 28, 65, 83, 281, 353, 486
Hpy8I	GTNNAC	3 cut(s)	323, 428, 449
HpyAV	CCTTC	2 cut(s)	68, 401
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	58, 195, 476
Hsp92II	CATG	3 cut(s)	187, 227, 339
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	61, 415
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	131, 164
MaeI	CTAG	2 cut(s)	54, 291
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	63, 417
MboI	GATC	2 cut(s)	61, 415
MhlI	GDGCHC	2 cut(s)	179, 325
MluCI	AATT	2 cut(s)	78, 162
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	13, 357
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	3 cut(s)	257, 300, 465
MslI	CAYNNNNRTG	2 cut(s)	354, 456
MspI	CCGG	2 cut(s)	179, 250
MspR9I	CCNGG	4 cut(s)	179, 209, 250, 384
MvaI	CCWGG	2 cut(s)	209, 384
MwoI	GCNNNNNNNGC	1 cut(s)	388
NciI	CCSGG	2 cut(s)	179, 250
NdeII	GATC	2 cut(s)	61, 415
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	187, 227, 339
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	207, 382
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	207, 382
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	354, 456
SaqAI	TTAA	3 cut(s)	257, 300, 465
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	61, 415
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	179, 209, 250, 384
SduI	GDGCHC	2 cut(s)	179, 325
SetI	ASST	9 cut(s)	59, 100, 126, 232, 277, 292, 300, 344, 393
SfaNI	GCATC	2 cut(s)	131, 164
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	354, 456
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	78, 162
SspMI	CTAG	2 cut(s)	54, 291
StyD4I	CCNGG	4 cut(s)	177, 207, 248, 382
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	4 cut(s)	27, 64, 84, 235
TasI	AATT	2 cut(s)	78, 162
Tru1I	TTAA	3 cut(s)	257, 300, 465
Tru9I	TTAA	3 cut(s)	257, 300, 465
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	87, 240
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	54, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.