Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003133.1

Orthogroup ID

OG0023094

Physical Location & Seq

Genomic Coordinates Reverse (-)

68922 .. 69333

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003133.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggttttggctgctaacctttgccttagatatgctcctggacttcggcccgggatcagcattgttctgaagcttcttcaaggtgatgaggaaattacaaggtgggcaaggcaagaagtcagtgcatcagatgaacttgacgcactggatggagaagctgttcctacaaatatcaaatcccatcttaacatggcgttgctagacttggaagatgattccctttctacgagtagtggtgaacaaagcatctcagtagaagattacttgcgaggtagatggagtcgctcaacaagctttgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

100

Amino Acids

11.01

Weight (kDa)

4.46

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023094)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003133.1_g000013
rosa_samantha	Rh2CG283000 Rh2DG319600 Rh6BG385200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	3 cut(s)	73, 158, 294
AluI	AGCT	3 cut(s)	73, 158, 294
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	51, 52
AsuHPI	GGTGA	2 cut(s)	95, 248
AvaI	CYCGRG	1 cut(s)	50
BccI	CCATC	3 cut(s)	143, 189, 270
BciT130I	CCWGG	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	51, 52
BfaI	CTAG	2 cut(s)	200, 301
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	39, 51, 52
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	39, 51, 52
BmsI	GCATC	2 cut(s)	134, 255
BpuMI	CCSGG	2 cut(s)	51, 52
BsaJI	CCNNGG	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	26, 250
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	3 cut(s)	37, 49, 50
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	127, 143
Cfr13I	GGNCC	1 cut(s)	48
Cfr9I	CCCGGG	1 cut(s)	50
CseI	GACGC	1 cut(s)	149
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	11, 49, 73, 158, 294
CviKI_1	RGCY	5 cut(s)	11, 49, 73, 158, 294
DdeI	CTNAG	2 cut(s)	26, 250
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	33, 191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	200, 301
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	71, 292
HinfI	GANTC	2 cut(s)	215, 280
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	95, 248
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	69, 130
Hpy8I	GTNNAC	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	26, 250
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	24, 51, 64, 131
LweI	GCATC	2 cut(s)	134, 255
MaeI	CTAG	2 cut(s)	200, 301
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	68, 221, 269
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	82, 263
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	186
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	3 cut(s)	39, 51, 52
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	2 cut(s)	51, 52
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	39, 51, 52
SetI	ASST	7 cut(s)	21, 75, 85, 104, 160, 274, 296
SfaNI	GCATC	2 cut(s)	134, 255
SmaI	CCCGGG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	93
SspMI	CTAG	2 cut(s)	200, 301
StyD4I	CCNGG	3 cut(s)	37, 49, 50
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	127, 150
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	147
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	2 cut(s)	127, 150
XmaI	CCCGGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	2 cut(s)	200, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.