Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0023094

Physical Location & Seq

Genomic Coordinates Reverse (-)

31609313 .. 31609823

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCCATAAATGGCGGTGGATTCCAGGCAAAGCCAATACTGAAGGGTGGGGAGGTTGCCCAACTGCTAGATCCAAGCCTGGGAAGTGACTATGATCATGACCAAATTGAGAGAATGGTTTTGGCTGCTAACCTTTGCCTTAGACATGCTCCTGGACTTCGGCCCGGGATCAGCATTGTTCTGAAGCTTCTTCAAGGTGATGAGGAAATTACAAGGTGGGCAAGGCAAGAAGTCAGTGCATCAGATGAACTTGACGCACTGGATGGAGAAGCTGTTCCTACAAATATCAAATCCCATCTTAACATGGCGTTGCTAGACTTGGAAGATGATTCCCTTTCTACAAGTAGTGGTGAACAAAGCATCTCAGTAGAAGATTACTTGCGAGGTAGATGGAGTCGCTCAACAAGCTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

4.54

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023094)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003133.1_g000013
rosa_samantha	Rh2CG283000 Rh2DG319600 Rh6BG385200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	65, 176
AcuI	CTGAAG	2 cut(s)	62, 203
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	3 cut(s)	24, 78, 151
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	187, 272, 408
AluI	AGCT	3 cut(s)	187, 272, 408
AlwI	GGATC	2 cut(s)	65, 176
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	165, 166
AsuHPI	GGTGA	2 cut(s)	209, 362
AvaI	CYCGRG	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	257, 303, 384
BciT130I	CCWGG	3 cut(s)	26, 80, 153
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	165, 166
BfaI	CTAG	3 cut(s)	68, 314, 415
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	5 cut(s)	26, 80, 153, 165, 166
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	162
BmrFI	CCNGG	5 cut(s)	26, 80, 153, 165, 166
BmsI	GCATC	2 cut(s)	248, 369
BpuMI	CCSGG	2 cut(s)	165, 166
BsaJI	CCNNGG	2 cut(s)	79, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	26, 80, 153
BseDI	CCNNGG	2 cut(s)	79, 164
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	70, 94, 168
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	97
BspPI	GGATC	2 cut(s)	65, 176
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	79, 164
BssMI	GATC	3 cut(s)	70, 94, 168
Bst2UI	CCWGG	3 cut(s)	26, 80, 153
BstDEI	CTNAG	2 cut(s)	140, 364
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	73, 97, 171
BstMBI	GATC	3 cut(s)	70, 94, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	3 cut(s)	26, 80, 153
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	5 cut(s)	24, 78, 151, 163, 164
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	241, 257
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	162
Cfr9I	CCCGGG	1 cut(s)	164
CseI	GACGC	1 cut(s)	263
CviAII	CATG	3 cut(s)	98, 146, 304
CviJI	RGCY	7 cut(s)	34, 78, 125, 163, 187, 272, 408
CviKI_1	RGCY	7 cut(s)	34, 78, 125, 163, 187, 272, 408
DdeI	CTNAG	2 cut(s)	140, 364
DpnI	GATC	3 cut(s)	72, 96, 170
DpnII	GATC	3 cut(s)	70, 94, 168
Eco57I	CTGAAG	2 cut(s)	62, 203
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	24, 78, 151
FaeI	CATG	3 cut(s)	101, 149, 307
FaiI	YATR	5 cut(s)	8, 93, 99, 147, 305
FatI	CATG	3 cut(s)	97, 145, 303
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	68, 314, 415
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	101, 149, 307
HindIII	AAGCTT	2 cut(s)	185, 406
HinfI	GANTC	3 cut(s)	21, 329, 394
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	209, 362
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	183, 244
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	2 cut(s)	140, 364
Hsp92II	CATG	3 cut(s)	101, 149, 307
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	70, 94, 168
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	8 cut(s)	11, 38, 65, 92, 138, 165, 178, 245
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	248, 369
MaeI	CTAG	3 cut(s)	68, 314, 415
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	72, 96, 170
MboI	GATC	3 cut(s)	70, 94, 168
MboII	GAAGA	3 cut(s)	182, 335, 383
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	105, 207
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	46, 196, 377
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	5 cut(s)	26, 80, 153, 165, 166
MvaI	CCWGG	3 cut(s)	26, 80, 153
MwoI	GCNNNNNNNGC	1 cut(s)	405
NciI	CCSGG	2 cut(s)	165, 166
NdeII	GATC	3 cut(s)	70, 94, 168
NlaIII	CATG	3 cut(s)	101, 149, 307
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	21, 329
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	3 cut(s)	24, 78, 151
PspGI	CCWGG	3 cut(s)	24, 78, 151
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	70, 94, 168
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	5 cut(s)	26, 80, 153, 165, 166
SetI	ASST	8 cut(s)	57, 135, 189, 199, 218, 274, 388, 410
SfaNI	GCATC	2 cut(s)	248, 369
SmaI	CCCGGG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	105, 207
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	3 cut(s)	68, 314, 415
StyD4I	CCNGG	5 cut(s)	24, 78, 151, 163, 164
TasI	AATT	2 cut(s)	105, 207
TfiI	GAWTC	2 cut(s)	21, 329
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	241, 264
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	261
TspMI	CCCGGG	1 cut(s)	164
TspRI	CASTG	2 cut(s)	241, 264
XceI	RCATGY	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	68, 314, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.