Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0023094

Physical Location & Seq

Genomic Coordinates Forward (+)

61362970 .. 61363601

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG385200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGGGCTAAGCCAATTTTAAATGGTGGGAAGGTGGCCCAACTATTAGATCCAAGCTTGGGAAAGTACGACCAAGTCCAAGTGGAGAGAATGGTTTTAGCAGCTACTCTTTGTATCAGACATGCCCCAAGAGCAAGGCCCCAAATGAGTTCTGTTGTGAAGCTCCTTCAAGGTGATGCAGAAATGATTAAGTGGGCAAGGCTACAAGTCCATGCTTGGGAGGAATCTGATATCCATGACGATGAGCCTTGTCCACGTTCGAATCTGCAGTCTCACCTTAACCTTGCACTGCTTGATGTGGAGGATGACTCGCTCTCCATGAGCAGCATTGAGCAAACTGTCTCCTTAGAGGACTACCTCAAAGGCCGGTGGAGCCGCTCATCAAGCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

131

Amino Acids

14.8

Weight (kDa)

5.3

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023094)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003133.1_g000013
rosa_samantha	Rh2CG283000 Rh2DG319600 Rh6BG385200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	59, 217
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	4 cut(s)	57, 104, 163, 387
AluI	AGCT	4 cut(s)	57, 104, 163, 387
Alw26I	GTCTC	2 cut(s)	276, 346
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	3 cut(s)	36, 137, 364
ApeKI	GCWGC	2 cut(s)	101, 324
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	2 cut(s)	37, 138
AsuHPI	GGTGA	2 cut(s)	185, 266
AsuII	TTCGAA	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	113, 336
BcoDI	GTCTC	2 cut(s)	276, 346
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	3 cut(s)	102, 325, 376
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	3 cut(s)	103, 326, 377
BmgT120I	GGNCC	2 cut(s)	37, 138
BmiI	GGNNCC	2 cut(s)	140, 374
BmsI	GCATC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu1102I	GCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 217
Bse118I	RCCGGY	1 cut(s)	366
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	59, 217
BseXI	GCAGC	2 cut(s)	113, 336
BshFI	GGCC	3 cut(s)	38, 139, 366
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	59, 217
BsmAI	GTCTC	2 cut(s)	276, 346
BsnI	GGCC	3 cut(s)	38, 139, 366
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	49
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	3 cut(s)	38, 139, 366
BspLI	GGNNCC	2 cut(s)	140, 374
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssMI	GATC	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	9, 346
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	276, 346
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 372, 384
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	113, 336
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	38, 139, 366
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	37, 138
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	122, 212, 236, 319
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	9, 346
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	232
FaeI	CATG	4 cut(s)	125, 215, 239, 322
FaiI	YATR	4 cut(s)	123, 213, 237, 320
FatI	CATG	4 cut(s)	121, 211, 235, 318
Fnu4HI	GCNGC	3 cut(s)	102, 325, 376
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	102, 325, 376
GluI	GCNGC	3 cut(s)	102, 325, 376
HaeIII	GGCC	3 cut(s)	38, 139, 366
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	4 cut(s)	125, 215, 239, 322
HindIII	AAGCTT	2 cut(s)	55, 385
HinfI	GANTC	3 cut(s)	224, 262, 308
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	2 cut(s)	185, 266
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	119, 229
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	25, 176
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	179, 268, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 372, 384
HpyF3I	CTNAG	2 cut(s)	9, 346
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	4 cut(s)	125, 215, 239, 322
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	168, 372
LpnPI	CCDG	1 cut(s)	380
Lsp1109I	GCAGC	2 cut(s)	113, 336
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	256
MalI	GATC	1 cut(s)	51
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	1 cut(s)	49
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	214, 295, 343, 368
MseI	TTAA	3 cut(s)	20, 189, 279
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	131, 372, 384
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	125, 215, 239, 322
NlaIV	GGNNCC	2 cut(s)	140, 374
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	224, 262
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	103, 326, 377
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	140, 374
PspPI	GGNCC	2 cut(s)	37, 138
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	20, 189, 279
SatI	GCNGC	3 cut(s)	102, 325, 376
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	2 cut(s)	37, 138
SchI	GAGTC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	15
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	224, 262
Tru1I	TTAA	3 cut(s)	20, 189, 279
Tru9I	TTAA	3 cut(s)	20, 189, 279
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	101, 324
TspRI	CASTG	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.