Rmu_sc0003200.1_g000001

heat shock factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003200.1
OG0023096
Physical Location & Seq
Forward (+)
1 .. 852
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003200.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
acgaatatgtttagtctggttgtagactactctttgccgtctggggtggttccattcatccgtcagttatatatcttgctctgcactaatcagaaaagtgtgagcgatgccttacggtggtcagcagatgaaaatagattcggcgtagtttctgacaagtgtttaaaagcaatctttccgcttcactttccgggcacagcttatagtaattttgacaaacaacttgtcctctatgggtttgtggctgatggaaggtggtggaagcatgaggagaacctattcagaaaggattttccagagttgcttgttcacatcaagcctagaagcatgagtaacttgttcaccaattctcatctcaagattgctttgcagcctaccaagaagaggggtgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000128 GO:0000228 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016458 GO:0019219 GO:0019222 GO:0030308 GO:0030447 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0035690 GO:0040007 GO:0040008 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044182 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0060258 GO:0065007 GO:0070013 GO:0070491 GO:0070784 GO:0070785 GO:0070887 GO:0080090 GO:0097159 GO:0098630 GO:0098743 GO:1900428 GO:1900429 GO:1900460 GO:1900462 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2000217 GO:2000218 GO:2000220 GO:2000221 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

131

Amino Acids

15.06

Weight (kDa)

9.51

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023096)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003200.1_g000001
rosa_samantha Rh6BG214000 Rh6BG214100 Rh6BG214200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 117, 384
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 370
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 384
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 117, 384
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 117, 384
Bsp1286I GDGCHC 1 cut(s) 197
BspACI CCGC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 57
CviAII CATG 2 cut(s) 266, 328
CviJI RGCY 4 cut(s) 200, 245, 319, 373
CviKI_1 RGCY 4 cut(s) 200, 245, 319, 373
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
FaeI CATG 2 cut(s) 269, 331
FaiI YATR 7 cut(s) 8, 70, 72, 204, 234, 267, 329
FatI CATG 2 cut(s) 265, 327
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 371
HapII CCGG 1 cut(s) 191
Hin1II CATG 2 cut(s) 269, 331
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 25, 310, 342
Hpy188I TCNGA 3 cut(s) 93, 154, 284
Hpy188III TCNNGA 2 cut(s) 296, 358
Hpy8I GTNNAC 3 cut(s) 25, 310, 342
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 84, 370
Hsp92II CATG 2 cut(s) 269, 331
LpnPI CCDG 4 cut(s) 2, 27, 204, 309
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 208, 346
MnlI CCTC 3 cut(s) 239, 262, 378
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 164
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 192
NciI CCSGG 1 cut(s) 192
NlaIII CATG 2 cut(s) 269, 331
NlaIV GGNNCC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 202, 257, 279
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 208, 346
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 117
TasI AATT 2 cut(s) 208, 346
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 46, 144
TspGWI ACGGA 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.