Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0023096

Physical Location & Seq

Genomic Coordinates Forward (+)

40383194 .. 40385078

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTTAGTCTGGTTGTAGACTACTCTTTGTCGTCTGGGGTGGTTCCATTCATCCGTCAGTTATATATCTTGCTCTGCACAAATCAGAAAAGTGTGAGCGATGCTTTACAGTGGTCTAAAGATGGAACCAGATTCAGCGTAGTTTCTGACAAGTGTTTAGAAGAAATCTTTCCGCTTCACTTTCCGGGCACAAATTATAGTAATTTTGACAAACAACTTATCCTCTATGGGTTTGTGGCCGATGGAAGATGGTGGAAGCATGAGGAGAACCTATTCATAAAGGGTTTTCCAGAGTTGCTCGTGCACATCAAGCCTAAAAGCAAGAGTAACTTGTTCACCAATTCTCATCTCAAGATTGCTTTGCAGCCTACCAAGAAGAGGGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

129

Amino Acids

14.8

Weight (kDa)

9.3

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	17 - 106	5.4e-11	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0023096)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003200.1_g000001
rosa_samantha	Rh6BG214000 Rh6BG214100 Rh6BG214200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	364
Asp700I	GAANNNNTTC	2 cut(s)	168, 272
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	328
BaeGI	GKGCMC	2 cut(s)	191, 306
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	3 cut(s)	116, 236, 243
BcnI	CCSGG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	45, 127
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	191, 306
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	378
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	191, 306
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	45, 127
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	184
BstSLI	GKGCMC	2 cut(s)	191, 306
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	116
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	3 cut(s)	239, 313, 367
CviKI_1	RGCY	3 cut(s)	239, 313, 367
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	64, 66, 198, 228, 261, 278
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	19, 304, 336
Hpy188I	TCNGA	2 cut(s)	87, 148
Hpy188III	TCNNGA	2 cut(s)	290, 352
Hpy8I	GTNNAC	3 cut(s)	19, 304, 336
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	78, 304, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	263
LpnPI	CCDG	4 cut(s)	21, 142, 198, 303
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	3 cut(s)	173, 258, 388
MhlI	GDGCHC	2 cut(s)	191, 306
MluCI	AATT	3 cut(s)	193, 202, 340
MnlI	CCTC	3 cut(s)	233, 256, 372
MroXI	GAANNNNTTC	2 cut(s)	168, 272
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	186
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	45, 127
PdmI	GAANNNNTTC	2 cut(s)	168, 272
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	45, 127
SatI	GCNGC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	191, 306
SetI	ASST	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	193, 202, 340
SsiI	CCGC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	111
TasI	AATT	3 cut(s)	193, 202, 340
TfiI	GAWTC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	40, 265
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	116
VneI	GTGCAC	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	2 cut(s)	168, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.