Rh6BG214000

Small acidic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0023096
Physical Location & Seq
Forward (+)
40373692 .. 40382001
8310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG214000.1

Sequence Viewer

Length: 540 bp
ATGCCTGCTAGAATAGTGTTACCTGGCATAGCATATGGAATGGTTAATAGGAACCTTGCTGGTGCGGGTCCTGCGGGTTGCATGACTGCTGACCAAAAGAAAAAGCAGCTGTGGGGCAACAAAAAGAACACAACTGCAGAAGAGACGAATATATTTAGTCTGGTTGTAGACTACTCTTTTCCGTCTGGGGTGGTTCCATTCATCCGTCAGTTATATATCTTGCTCTGCACTAATCAAAAAAGTGTGAGCGATGCCTTACAGTGGTCTACAGATGGAACCAGATTCGGCGTAGTTTCTGACAACTGTTTAGAAGAAATCTTTCCGCTTCACTTTTCGGGCACAGATTATAGTAATTTTGACAAACAACTTGTCCTCTATGGGTTTGTGGCCGATGGAAGACGGTGGAAGCATGAGGAGAACCTATTCATAAAGGGTTTTCCAGAGTTGCTCGTGCACATCAGGCCTAAAAGCAAGAGTAACTTGTTCACCAATTCTCATCTCAAGATTGCTTTGCAGCCTACCAAGAAGAGGGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

179

Amino Acids

20.02

Weight (kDa)

9.4

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 67 - 155 1.6e-09 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023096)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003200.1_g000001
rosa_samantha Rh6BG214000 Rh6BG214100 Rh6BG214200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 168, 266
AciI CCGC 3 cut(s) 65, 74, 323
AcoI YGGCCR 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 261, 528
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 137
Alw44I GTGCAC 1 cut(s) 452
AoxI GGCC 2 cut(s) 387, 461
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 106, 514
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
Asp700I GAANNNNTTC 2 cut(s) 318, 422
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 2 cut(s) 341, 456
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 118, 526
BccI CCATC 2 cut(s) 266, 386
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 135, 267
BisI GCNGC 2 cut(s) 107, 515
BlsI GCNGC 2 cut(s) 108, 516
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 4 cut(s) 53, 69, 195, 277
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 528
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 261, 528
BseRI GAGGAG 1 cut(s) 428
BseSI GKGCMC 2 cut(s) 341, 456
BseXI GCAGC 2 cut(s) 118, 526
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 2 cut(s) 389, 463
BsiHKAI GWGCWC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 261, 528
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 389, 463
Bsp1286I GDGCHC 2 cut(s) 341, 456
BspACI CCGC 3 cut(s) 65, 74, 323
BspANI GGCC 2 cut(s) 389, 463
BspLI GGNNCC 4 cut(s) 53, 69, 195, 277
BspMAI CTGCAG 1 cut(s) 139
BssSI CACGAG 1 cut(s) 449
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 261, 305, 402
Bst6I CTCTTC 2 cut(s) 135, 521
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 71, 460
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 135, 267
BstSLI GKGCMC 2 cut(s) 341, 456
BstV1I GCAGC 2 cut(s) 118, 526
BstV2I GAAGAC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 389, 463
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 2 cut(s) 82, 410
CviJI RGCY 4 cut(s) 109, 389, 463, 517
CviKI_1 RGCY 4 cut(s) 109, 389, 463, 517
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 135, 521
EarI CTCTTC 2 cut(s) 135, 521
Eco147I AGGCCT 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 2 cut(s) 85, 413
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FatI CATG 2 cut(s) 81, 409
FauI CCCGC 2 cut(s) 58, 67
FauNDI CATATG 1 cut(s) 34
FblI GTMKAC 2 cut(s) 168, 266
Fnu4HI GCNGC 2 cut(s) 107, 515
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 107, 515
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 107, 515
HaeIII GGCC 2 cut(s) 389, 463
Hin1II CATG 2 cut(s) 85, 413
HinfI GANTC 1 cut(s) 282
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 4 cut(s) 169, 267, 454, 486
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 440, 502
Hpy8I GTNNAC 4 cut(s) 169, 267, 454, 486
HpyCH4III ACNGT 3 cut(s) 261, 305, 402
HpyCH4V TGCA 5 cut(s) 81, 137, 228, 454, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 460
Hsp92II CATG 2 cut(s) 85, 413
Lsp1109I GCAGC 2 cut(s) 118, 526
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 18, 476
MboII GAAGA 4 cut(s) 152, 323, 408, 538
MhlI GDGCHC 2 cut(s) 341, 456
MluCI AATT 2 cut(s) 352, 490
MnlI CCTC 3 cut(s) 383, 406, 522
MroXI GAANNNNTTC 2 cut(s) 318, 422
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 71, 460
NdeI CATATG 1 cut(s) 34
NlaIII CATG 2 cut(s) 85, 413
NlaIV GGNNCC 4 cut(s) 53, 69, 195, 277
PceI AGGCCT 1 cut(s) 463
PdmI GAANNNNTTC 2 cut(s) 318, 422
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 108, 516
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 4 cut(s) 53, 69, 195, 277
PspPI GGNCC 1 cut(s) 68
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 107, 515
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 341, 456
SetI ASST 4 cut(s) 25, 57, 111, 423
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 2 cut(s) 135, 267
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 2 cut(s) 352, 490
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 3 cut(s) 65, 74, 323
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 3 cut(s) 261, 305, 402
TasI AATT 2 cut(s) 352, 490
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 266
TseI GCWGC 2 cut(s) 106, 514
TspDTI ATGAA 2 cut(s) 190, 415
TspGWI ACGGA 2 cut(s) 171, 194
TspRI CASTG 1 cut(s) 266
VneI GTGCAC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 168, 266
XmnI GAANNNNTTC 2 cut(s) 318, 422
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.