Rmu_sc0003200.1_g000001

heat shock factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003200.1
OG0023096
Physical Location & Seq
Forward (+)
1 .. 852
852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
acgaatatgtttagtctggttgtagactactctttgccgtctggggtggttccattcatccgtcagttatatatcttgctctgcactaatcagaaaagtgtgagcgatgccttacggtggtcagcagatgaaaatagattcggcgtagtttctgacaagtgtttaaaagcaatctttccgcttcactttccgggcacagcttatagtaattttgacaaacaacttgtcctctatgggtttgtggctgatggaaggtggtggaagcatgaggagaacctattcagaaaggattttccagagttgcttgttcacatcaagcctagaagcatgagtaacttgttcaccaattctcatctcaagattgctttgcagcctaccaagaagaggggtgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000128 GO:0000228 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016458 GO:0019219 GO:0019222 GO:0030308 GO:0030447 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0035690 GO:0040007 GO:0040008 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044182 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051716 GO:0060255 GO:0060258 GO:0065007 GO:0070013 GO:0070491 GO:0070784 GO:0070785 GO:0070887 GO:0080090 GO:0097159 GO:0098630 GO:0098743 GO:1900428 GO:1900429 GO:1900460 GO:1900462 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2000217 GO:2000218 GO:2000220 GO:2000221 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

131

Amino Acids

15.06

Weight (kDa)

9.51

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 19 - 107 1.5e-09 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023096)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003200.1_g000001
rosa_samantha Rh6BG214000 Rh6BG214100 Rh6BG214200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 117, 384
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 370
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 384
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 117, 384
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 117, 384
Bsp1286I GDGCHC 1 cut(s) 197
BspACI CCGC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 57
CviAII CATG 2 cut(s) 266, 328
CviJI RGCY 4 cut(s) 200, 245, 319, 373
CviKI_1 RGCY 4 cut(s) 200, 245, 319, 373
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
FaeI CATG 2 cut(s) 269, 331
FaiI YATR 7 cut(s) 8, 70, 72, 204, 234, 267, 329
FatI CATG 2 cut(s) 265, 327
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 371
HapII CCGG 1 cut(s) 191
Hin1II CATG 2 cut(s) 269, 331
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 25, 310, 342
Hpy188I TCNGA 3 cut(s) 93, 154, 284
Hpy188III TCNNGA 2 cut(s) 296, 358
Hpy8I GTNNAC 3 cut(s) 25, 310, 342
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 84, 370
Hsp92II CATG 2 cut(s) 269, 331
LpnPI CCDG 4 cut(s) 2, 27, 204, 309
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 208, 346
MnlI CCTC 3 cut(s) 239, 262, 378
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 164
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 192
NciI CCSGG 1 cut(s) 192
NlaIII CATG 2 cut(s) 269, 331
NlaIV GGNNCC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 202, 257, 279
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 208, 346
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 117
TasI AATT 2 cut(s) 208, 346
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 46, 144
TspGWI ACGGA 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.